BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906390

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19893.1 | Symbols:  | Defensin-like (DEFL) family protein |...   106    1e-22


> AT2G19893.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:8589953-8590324 FORWARD LENGTH=225
Length=225

 Score =  106 bits (57),  Expect = 1e-22
 Identities = 67/71 (94%), Gaps = 3/71 (4%)
 Strand=Plus/Plus

Query  1   ATGGCCAAGCCTTGTGCTGCATTTCTTCTTGTCTTCCTCTGCCTTTCCATGCTCATCCTG  60
           |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||
Sbjct  1   ATGGCCAAGCCTTGTGCTGCA--T-TTCTTGTCTTCCTCTGCCTTTCCATGCTCATCCTG  57

Query  61  TCAACCCCTGA  71
           |||| ||||||
Sbjct  58  TCAATCCCTGA  68



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5