BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906399
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12290.1 | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974171-... 366 4e-101
> AT5G12290.1 | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974171-3978160
REVERSE LENGTH=2106
Length=2106
Score = 366 bits (198), Expect = 4e-101
Identities = 215/223 (96%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 1 GATAAGGACGCAGAAACCGTATTTGGCTTGCTAATATACAGCCTGGAACGTTTGTATCGA 60
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1682 GATAAGGACGCAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGA 1741
Query 61 GTTGTTGAGAAACCTGCAAGAGCAACTGACGAGTGGGATTTAGTGAAACAAGATCTGATT 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1742 GTTGTTGAGAAACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATC 1801
Query 121 GAGTTAGGAAGGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GAGTTAGGAAGGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTA 1861
Query 181 ACGGTTTATGACTGCTTGCTTCCCACTC-GCAAGCGACAATAA 222
|||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1862 ACGGTTTATGACTGCTTGCTTCCCACTCTG-AAGCGACAATAA 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5