BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906417

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00114.1 | Symbols:  | pseudogene of transketolase | chr4:40...   222    7e-58


> AT4G00114.1 | Symbols:  | pseudogene of transketolase | chr4:40862-41383 
REVERSE LENGTH=522
Length=522

 Score =  222 bits (120),  Expect = 7e-58
 Identities = 154/170 (91%), Gaps = 4/170 (2%)
 Strand=Plus/Plus

Query  10   GCTAGAGAGAAGCTGAGAGAAGAAGGAAGCGCAATGAGAGTAGTGTCATTGGTGAGTTGG  69
            ||| |||||||||| ||||||||| |||  ||| ||||||||||||||||||||||||||
Sbjct  230  GCTGGAGAGAAGCTAAGAGAAGAAAGAAAAGCAGTGAGAGTAGTGTCATTGGTGAGTTGG  289

Query  70   GAGCTGTTTGATAAACAAAGCA-AAGAATACAAAGAAAAG-GTGTTACCTTCAGAGGTTT  127
            |||||||||||| ||||||| | ||||||||||||||| | |||||||||| ||||||||
Sbjct  290  GAGCTGTTTGATGAACAAAG-AGAAGAATACAAAGAAA-GTGTGTTACCTTGAGAGGTTT  347

Query  128  CAGGAAAAGTGAGCACTGAAGCAGGGTCGACCTTTGGGTGGGAGAAGATG  177
            ||| || | |||||| ||||||||||||||||||||||||||||||||||
Sbjct  348  CAGCAAGACTGAGCATTGAAGCAGGGTCGACCTTTGGGTGGGAGAAGATG  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7746408054


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5