BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906419

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19590.1 | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8475...   514    2e-145


> AT2G19590.1 | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8475966-8477502 
REVERSE LENGTH=1354
Length=1354

 Score =  514 bits (278),  Expect = 2e-145
 Identities = 323/345 (94%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  1    ATGGTTTTGATCAAAGAGAGAGAGATGGAGATTCCTGTTATCGAATTTGGAGAATTGGAT  60
            ||||||||||||||||||||||||||||||||||| ||||| || |||| ||| ||||||
Sbjct  149  ATGGTTTTGATCAAAGAGAGAGAGATGGAGATTCCAGTTATTGATTTTGCAGAGTTGGAT  208

Query  61   GGAGAGAACAGAAGCAAGACCATGGCACTTCTTGATCATGCATGTGATAAGTGGGGCTTC  120
            |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  209  GGAGAGAAGAGAAGCAAGACCATGTCACTTCTTGATCATGCATGTGATAAGTGGGGATTC  268

Query  121  TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT  328

Query  181  AACTCTCACTATGAGGAGCATTTAAAAGAGAAGTGTTACCAGTCAGCGATGGTCAAAGCT  240
            ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||
Sbjct  329  AACTCTCACTATGAGGAGCATTTGAAAGAGAAGTTTTACCAGTCAGAGATGGTCAAGGCT  388

Query  241  TTGACTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATATCTCACAAG  300
            |||| ||||||||||||||||||||||||||||||||||||||||||||| || || || 
Sbjct  389  TTGAGTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATCTCACATAAA  448

Query  301  CCAACTTCAAACATATG-CGAGATCCCAAACAATTCAGAGGAACT  344
            ||||||||||| || || | |||||||||||| ||||||||||||
Sbjct  449  CCAACTTCAAATATCTGTC-AGATCCCAAACATTTCAGAGGAACT  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5