BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906436
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase... 562 1e-159
AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase... 496 1e-139
AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase... 490 6e-138
> AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:10402872-10403511 FORWARD
LENGTH=640
Length=640
Score = 562 bits (304), Expect = 1e-159
Identities = 513/608 (84%), Gaps = 37/608 (6%)
Strand=Plus/Plus
Query 1 ATGGTGACATACGCCGATAATAAA-ATTTCACCGGCTTGTTTATTGGTTTTACTTCTTTT 59
|||||| |||||| |||||| ||| ||||| ||||||||| |||||||||||||||||
Sbjct 15 ATGGTGGCATACGTCGATAA-AAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTCTTTT 73
Query 60 TGTTGTCCCATCTTATGCAATGTTTAGTACGATGGTTACAGAAGATGAGATCCACACCAT 119
||||| | |||| ||||||| ||||| |||| |||||||| ||||| |||||||||||||
Sbjct 74 TGTTGACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCAT 133
Query 120 ATGCACCAAAGAGGATATCAATTCTTCATTTTGTTTTGAGGTTCTGAAA-GCAAATCCCA 178
|||||||||| | || ||||||||||||||||||||| | ||||| ||| |||||||
Sbjct 134 ATGCACCAAACAAGAGATCAATTCTTCATTTTGTTTTCAAGTTCT-AAATACAAATCCTG 192
Query 179 AAATTGCTAGATTAGATTTTTCTGGTCT-TGCCAAATTTTTGCTCAATTATCAGGCTCAA 237
||||||||| |||||||||| || |||| | ||||||| |||| |||||||||||||||
Sbjct 193 AAATTGCTAAATTAGATTTTCCTAGTCTCT-TCAAATTTGTGCTTAATTATCAGGCTCAA 251
Query 238 AATATTTCGGATACGCTGAAGCATTTTAAGTTATCAGGAGGCTACACGCCGGATATTGAT 297
||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 252 AATATTTCGGATACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGA- 310
Query 298 TCATATATCTTCTGCGATACTCAATATCGCTTATGCAAAGAATTATATGAAAATGCTCTT 357
|| || | | | | | || ||||||||| ||||||||||| | ||||| ||
Sbjct 311 --AT----CT-C----A-A-T-A-TA--GCTTATGCATAGAATTATATGGATATGCT-TT 352
Query 358 -GACAATCGTGA-ATCTGCCCTCAAATATTTGGCTGCCAAAGATTATGACGGCTTAAACA 415
|| |||||||| || | |||||| |||||| ||||||||||| ||| || || ||||||
Sbjct 353 CGATAATCGTGATAT-TACCCTCAGATATTTAGCTGCCAAAGACTATAACAGCGTAAACA 411
Query 416 CTATGGTCAGCGGAACGTTG-ACAGATATGTTTACGTGTACTGATGATTTGTCAACAATG 474
||| |||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 412 CTAGGGTCAGTGGAACGTTGGA-AGATATATTTACGTGTACTGATGATTTGTCAACAATG 470
Query 475 AAGCCAGTACCACAATTTTTTATGACGAAAAGTAATGTT-ATTAAAGACTTGTCTAACAT 533
|||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| ||
Sbjct 471 AAGCCAATACCACAATTTTTTATGACGGAAAGTAAT-TTGATTAAAGAATTGTCTAAGAT 529
Query 534 TATCTTAGTGATTGTCGAATGTTTCCTACGAAA-AGAAAAAATATTATGTCCTTCTCGAG 592
| ||||||||||| ||||||||||| || | || |||||| | ||| ||| || |||
Sbjct 530 TCTCTTAGTGATTCTCGAATGTTTCATAAGTAAGAGAAAAGA-ATTCTGTAATT---GAG 585
Query 593 ATCTATAA 600
||||||||
Sbjct 586 ATCTATAA 593
> AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:3898002-3898609 FORWARD
LENGTH=608
Length=608
Score = 496 bits (268), Expect = 1e-139
Identities = 497/601 (83%), Gaps = 41/601 (7%)
Strand=Plus/Plus
Query 10 TACGCCGATAATAAA-ATTTCACCGGCTTGTTTATTGGTTTTACTTCTTTTTGTTGTCCC 68
|||| |||||| ||| ||||| ||||||||| |||||||||||||||||||||| | |
Sbjct 10 TACGTCGATAA-AAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTCTTTTTGTTGACTC 68
Query 69 ATCTTATGCAATGTTTAGTACGATGGTTACAGAAGATGAGATCCACACCATATGCACCAA 128
||| ||||||| ||||| || | |||||||| ||||| |||||||||| |||||||||||
Sbjct 69 ATCGTATGCAAGGTTTAATATGTTGGTTACAAAAGATCAGATCCACACAATATGCACCAA 128
Query 129 AGAGGATATCAATTCTTCATTTTGTTTTGAGGTTCTGAAA-GCAAATCCCAAAATTGCTA 187
| | |||||||||||||||| ||||||| | ||||| ||| |||||||| |||||||||
Sbjct 129 ACAAGATATCAATTCTTCATATTGTTTTCAAGTTCT-AAACGCAAATCCTGAAATTGCTA 187
Query 188 GATTAGATTTTTCTGGTCT-TGCCAAATTTTTGCTCAATTATCAGGCTCAAAATATTTCG 246
||||||||||| || |||| | ||||||| |||| ||||||||||||||||||||||||
Sbjct 188 GATTAGATTTTCCTAGTCTCT-TCAAATTTGTGCTTAATTATCAGGCTCAAAATATTTCG 246
Query 247 GATACGCTGAAGCATTTTAAGTTATCAGGAGGCTACACGCCGGATATTGATTCATATATC 306
|||||||||||||| ||||| ||||||||||| |||||||||| | |||| || |
Sbjct 247 GATACGCTGAAGCAGTTTAAATTATCAGGAGGTTACACGCCGGGTGTTGA---AT----C 299
Query 307 TTCTGCGATACTCAATATCGCTTATGCA-AAGAATTATATGAAAATGCTCTT-GACAATC 364
| | | | | | || ||||||||| || ||||||||| | ||| || || ||||
Sbjct 300 T-C----A-A-T-A-TA--GCTTATGCATAA-AATTATATGGATGGGCT-TTCGATAATC 346
Query 365 GTGA-A-TCTGCCCTCAAATATTTGGCTGCCAAAGATTATGACGGCTTAAACACTATGGT 422
|||| | | | || ||| |||||||||||||||||| ||| || || ||| ||||||| |
Sbjct 347 GTGATAGTAT-CC-TCAGATATTTGGCTGCCAAAGACTATAACAGCGTAAGCACTATGAT 404
Query 423 CAGCGGAACGTTG-ACAGATATGTTTACGTGTACTGATGATTTGTCAACAATGAAGCCAG 481
| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CGGTGGAACGTTGGA-AGATATGTTTACGTGTACTGATGATTTGTCAACAATGAAGCCAG 463
Query 482 TACCACAATTTTTTATGACGAAAAGTAATGTT-ATTAAAGACTTGTCTAACATTATCTTA 540
|||||||||||||||||||| |||||||| || |||||||| || ||||| ||| || |
Sbjct 464 TACCACAATTTTTTATGACGGAAAGTAAT-TTGATTAAAGAATTATCTAAGATTCTCGCA 522
Query 541 GTGATTGTCGAATGTTTCCTACGAAA-AGAAAAAATATTATGTCCTTCTCGAGATCTATA 599
|||||| | ||||||||| || | || |||||| | ||| ||| || ||||||||||
Sbjct 523 GTGATTCTTGAATGTTTCATAAGTAAGAGAAAAGA-ATTCTGTAATT---GAGATCTATA 578
Query 600 A 600
|
Sbjct 579 A 579
> AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:1877872-1878545 FORWARD
LENGTH=674
Length=674
Score = 490 bits (265), Expect = 6e-138
Identities = 493/598 (82%), Gaps = 35/598 (6%)
Strand=Plus/Plus
Query 10 TACGCCGATAATAAA-ATTTCACCGGCTTGTTTATTGGTTTTACTTCTTTTTGTTGTCCC 68
|||| |||||| ||| ||||| ||||||||| |||||||||||||||||||||| | |
Sbjct 26 TACGTCGATAA-AAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTCTTTTTGTTGACTC 84
Query 69 ATCTTATGCAATGTTTAGTACGATGGTTACAGAAGATGAGATCCACACCATATGCACCAA 128
||| ||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 85 ATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCATATGCACCAA 144
Query 129 AGAGGATATCAATTCTTCATTTTGTTTTGAGGTTCTGAAA-GCAAATCCCAAAATTGCTA 187
| | |||||||||||||||| ||||||| | ||||| ||| |||||||| |||||||||
Sbjct 145 ACAAGATATCAATTCTTCATATTGTTTTCAAGTTCT-AAACGCAAATCCTGAAATTGCTA 203
Query 188 GATTAGATTTTTCTGGTCT-TGCCAAATTTTTGCTCAATTATCAGGCTCAAAATATTTCG 246
||||||||||| || |||| | ||||||| |||| |||||||||||||||||||||||
Sbjct 204 GATTAGATTTTCCTAGTCTCT-TCAAATTTGTGCTTAATTATCAGGCTCAAAATATTTCA 262
Query 247 GATACGCTGAAGCATTTTAAGTTATCAGGAGGCTACACGCCGGATATTGATTCATATATC 306
|||| ||||||||| ||||| |||||||||||||||||||||| | |||| || || |
Sbjct 263 GATAAGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCCGGGTGTTGAATC-TA-A-- 318
Query 307 TTCTGCGATACTCAATATCGCTTATGCAAAGAATTATATGAAAATGCTCTT-GACAATCG 365
||| | | | |||||| | |||||| ||||||||| || || ||| ||
Sbjct 319 -------ATA-T--A-A---CTTATGTATAGAATTTTATGAAAATTCT-TTCGACCGGCG 363
Query 366 TGAAT-CTGCCCTCAAATATTTGGCTGCCAAAGATTATGACGGCTTAAACACTATGGTCA 424
|| || ||||||| |||||||||||||||||| |||| | || ||||||||||||||
Sbjct 364 TG-ATGAAGCCCTCAGATATTTGGCTGCCAAAGACTATGGCAGCGTAAACACTATGGTCG 422
Query 425 GCGGAACGTTGACAGATATGTT-TACGTGTACTGATGATTTGTCAACAATGAAGCCAGTA 483
| |||||| || | ||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 423 GTGGAACGGCGATAAATATGTTCAAC-TGTGCTGATGATTTGTCAACAATGAAGCCAGTA 481
Query 484 CCACAATTTTTTATGACGAAAAGTAATGTT-ATTAAAGACTTGTCTAACATTATCTTAGT 542
|||||||||||| ||||| |||||||| || |||||||| |||||||| ||| |||||||
Sbjct 482 CCACAATTTTTTGTGACGGAAAGTAAT-TTGATTAAAGAATTGTCTAAGATTCTCTTAGT 540
Query 543 GATTGTCGAATGTTTCCTACGAAAAGAAAAAATATTATGTCCTTCTCGAGATCTATAA 600
|||| | ||||||||| || | || ||||||| | ||| | | | |||||||||||
Sbjct 541 GATTCTAGAATGTTTCATAAGTAA-GAAAAAAGAATAT-TG-TAATAGAGATCTATAA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5