BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906439
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
ATMG01190.1 | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302... 1415 0.0
AT2G07698.1 | Symbols: | ATPase, F1 complex, alpha subunit pro... 1415 0.0
ATMG01020.1 | Symbols: ORF153B | hypothetical protein | chrM:26... 95.3 8e-19
AT2G07674.1 | Symbols: | Unknown conserved protein | chr2:3269... 95.3 8e-19
> ATMG01190.1 | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689
REVERSE LENGTH=1524
Length=1524
Score = 1415 bits (766), Expect = 0.0
Identities = 770/772 (99%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 69 CCGACAAACTGGAAAAACGACTATTGCTATCGATACCATATTAAACCAAAAGCAAATAAA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CCGACAAACTGGAAAAACGACTATTGCTATCGATACCATATTAAACCAAAAGCAAATAAA 575
Query 129 CTCAAGGGCCACCTCTGAGAGTGAGACAATGTATTGTGTCTATGTAGCGATTGGACAGAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CTCAAGGGCCACCTCTGAGAGTGAGACAATGTATTGTGTCTATGTAGCGATTGGACAGAA 635
Query 189 ACGCTCGACTGTGGGACAATTAATTCAAACTCTTGAAGAAGCGAATGCTTTGGAATATTC 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 ACGCTCGACTGTGGGACAATTAATTCAAACTCTTGAAGAAGCGAATGCTTTGGAATATTC 695
Query 249 CATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTTTGGCCCCATATTC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTTTGGCCCCATATTC 755
Query 309 CGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGA 815
Query 369 TGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACC 875
Query 429 AGGCCGTGAGGCTTTTCCAGGTGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGC 488
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 AGGCCGTGAGGCTTTCCCAGGTGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGC 935
Query 489 GGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAAC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAAC 995
Query 549 ACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 ACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACA 1055
Query 609 AATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTT 1115
Query 669 ATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTATGCGGTAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 ATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTATGCGGTAG 1175
Query 729 TTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGA 788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGA 1235
Query 789 CCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAA 1287
> AT2G07698.1 | Symbols: | ATPase, F1 complex, alpha subunit protein
| chr2:3361474-3364127 FORWARD LENGTH=2433
Length=2433
Score = 1415 bits (766), Expect = 0.0
Identities = 770/772 (99%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 69 CCGACAAACTGGAAAAACGACTATTGCTATCGATACCATATTAAACCAAAAGCAAATAAA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CCGACAAACTGGAAAAACGACTATTGCTATCGATACCATATTAAACCAAAAGCAAATAAA 1385
Query 129 CTCAAGGGCCACCTCTGAGAGTGAGACAATGTATTGTGTCTATGTAGCGATTGGACAGAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CTCAAGGGCCACCTCTGAGAGTGAGACAATGTATTGTGTCTATGTAGCGATTGGACAGAA 1445
Query 189 ACGCTCGACTGTGGGACAATTAATTCAAACTCTTGAAGAAGCGAATGCTTTGGAATATTC 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 ACGCTCGACTGTGGGACAATTAATTCAAACTCTTGAAGAAGCGAATGCTTTGGAATATTC 1505
Query 249 CATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTTTGGCCCCATATTC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTTTGGCCCCATATTC 1565
Query 309 CGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 CGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGA 1625
Query 369 TGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 TGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACC 1685
Query 429 AGGCCGTGAGGCTTTTCCAGGTGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGC 488
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 AGGCCGTGAGGCTTTCCCAGGTGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGC 1745
Query 489 GGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAAC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 GGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAAC 1805
Query 549 ACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 ACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACA 1865
Query 609 AATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 AATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTT 1925
Query 669 ATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTATGCGGTAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 ATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTATGCGGTAG 1985
Query 729 TTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGA 788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 TTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGA 2045
Query 789 CCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 CCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAA 2097
> ATMG01020.1 | Symbols: ORF153B | hypothetical protein | chrM:261617-262078
REVERSE LENGTH=462
Length=462
Score = 95.3 bits (51), Expect = 8e-19
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 20 TCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCC 70
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCC 384
> AT2G07674.1 | Symbols: | Unknown conserved protein | chr2:3269151-3269906
FORWARD LENGTH=756
Length=756
Score = 95.3 bits (51), Expect = 8e-19
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 20 TCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCC 70
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCC 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5