BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906443 Length=324 Score E Sequences producing significant alignments: (Bits) Value AT4G39880.1 | Symbols: | Ribosomal protein L23/L15e family pro... 169 2e-41 > AT4G39880.1 | Symbols: | Ribosomal protein L23/L15e family protein | chr4:18504537-18505338 FORWARD LENGTH=802 Length=802 Score = 169 bits (91), Expect = 2e-41 Identities = 151/178 (85%), Gaps = 12/178 (7%) Strand=Plus/Plus Query 137 GGAAGA-A-GAAGAGTAAAGTGATAA-GAGT-TAGCTTTGTTGAGGAAGAAGATGATAAG 192 |||||| | |||||||||||||| || || | |||||||||||||||||||||||||||| Sbjct 379 GGAAGATAGGAAGAGTAAAGTGA-AAGGA-TCTAGCTTTGTTGAGGAAGAAGATGATAAG 436 Query 193 AAGTATCATCATTGGCTTGATCGCAAGGAGAAGTGGGAAATCGC-GGTTATGGTAAAGGT 251 ||| | ||||||||||||||| ||||||||| |||| || | ||||||||||||||| Sbjct 437 AAG-AG--TCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGT 493 Query 252 AAAGATCGTGGTGGTGGTGAAAGAGCTAATTCTTCGACGAG-GACTGGTTTTGCGGCG 308 |||| |||| | ||||||||||| ||||| ||| ||||||| | |||| ||||||| Sbjct 494 AAAGGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGAGAGG-TGGTGCTGCGGCG 550 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15080324700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5