BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906449
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19360.1 | Symbols: | Protein of Unknown Function (DUF239) ... 952 0.0
AT2G17750.1 | Symbols: NIP1 | NEP-interacting protein 1 | chr2:... 366 2e-100
> AT2G19360.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:8378664-8383374 FORWARD LENGTH=1281
Length=1281
Score = 952 bits (515), Expect = 0.0
Identities = 592/629 (94%), Gaps = 6/629 (1%)
Strand=Plus/Plus
Query 1 ATGATCGATCGAATAATGACCAATTTAATCGTGCTATACATTCTAGTCATACTAGCTATG 60
||||||| |||||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 ATGATCGGTCGAATAATGGCCAATTTAATTGTGCTATACATTCTAGTCATAGAAGCTATG 60
Query 61 ATAGTCACCGGAAGCGAGTCTTCTAATACTCGTGATGCTGAAATAAATCGACTCATGAAG 120
||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 61 ATAGTCATAGGAAGCGAGTCTTCTGATTCTCGTGATGCTGAAATAAATCGACTCTTGAAG 120
Query 121 AAACTCAACAAACCTTTTCTTAAATCCATCAAGAGTCCAGATGGAGATATCATAGATTGT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACTCAACAAACCTTTCCTTAAATCCATCAAGAGTCCAGATGGAGATATCATAGATTGT 180
Query 181 GTTCATATGAAAAATCATCCAATTTATGATCATCCTTTATTCAAAAACCACACCATTCAG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCATATGAAAAATCATCCCATTTATGATCATCCTTTATTCAAAAACCACACCATTCAG 240
Query 241 ATGAGACCAACTTCTTACCCAGAAGGATGGAGCAATAAAGATTCAGATAATGAAAAACAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ATGAGACCAACTTCTTACCCAGAAGGATGGAGCAATAAAGATTCAGATAACGAAAAACAT 300
Query 301 AATATGGTTCCTCAACTTTGGACAATCAATGGAAAATGTCCAAAAAATAGTATTCCGATC 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AAAATGGTTCCTCAACTTTGGACAATCAATGGAAAATGTCCAAAAAATAGTATTCCCATC 360
Query 361 AGAAGAACGAGAAAAGAAGATATTTTACGAGCAAAATCCATTGAAAGGTTTGGaaaaaaa 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 361 AGAAGAACGAGAAAAGAAGATATTTTACGAGCAAAATCAATTGAAAGGTTTGGGAAAAAA 420
Query 421 GATCCCAACAATATCCATCAACATAAACGACCAACCAATCCAACTAA---CGACGGTGTA 477
|||||||||||||||||||||||||||| | ||| ||||||||||| ||||||| |
Sbjct 421 GATCCCAACAATATCCATCAACATAAAC--C-AACGAATCCAACTAATAACGACGGTACA 477
Query 478 CATGAGTATGCCATACTTAAAGTGGAAGTAAATTCTCCTCGAGCTATGTTTTATGGAACC 537
||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 478 CATGAGTATGCCATACTTAAAGTGGGAGAAAATTCTCCTCGAGCTAAATTTTATGGAACC 537
Query 538 CAAACTTTTATAAATGTGTGGAAGCCTTATGTACAACATACAAAAGAATTTAGCTTAGCA 597
||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||
Sbjct 538 CAAACGCTTATAAATGTGTGGAAGCCTTTTGTACAACATAGAAATGAATTTAGCTTATCA 597
Query 598 CAAATATGGATGTCGGCTGGAAGTTATAG 626
|||||||||||||||||||||||||||||
Sbjct 598 CAAATATGGATGTCGGCTGGAAGTTATAG 626
Score = 874 bits (473), Expect = 0.0
Identities = 569/615 (93%), Gaps = 8/615 (1%)
Strand=Plus/Plus
Query 623 ATAGTACTCAACTTGAAACCATTGAAGCTGGTTGGCAGGTGTTG-ACTGCACTTTATAAT 681
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 665 ATAGTACTCAACTTGAAACCATTGAAGCTGGTTGGCAGGTG-TGCACTGTACTTTATAAT 723
Query 682 GATACTAACCCTCGATACTTTGTCTATTGGACTAATGATTCATATATACAACATGGTTGC 741
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 724 GATACTAACCCTCGATACTTTGTCTACTGGACTAATGATTCATATACACAACATGGTTGC 783
Query 742 TATAATACTATTTGCCCCGGCTTTGTTGTTGTCAACCAAGCATTTGCTCTAGGCGCGGCC 801
||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TATAACAATCTTTGCTCCGGCTTTGTTGTTGTCAACCAAGCATTTGCTCTAGGCGCGGCC 843
Query 802 GTTCCTGAAGTTTCTATCCGTGATGGTCTACAATACGAAATTTTCACAAGTATATGGAAG 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GTTCCTGAAGTTTCTATCCGTGATGGTCTACAATACGAAATTTTCACAAGTATATGGAAG 903
Query 862 GACCGTAGTTCAGGGAATTGGTGGTTGAGATTTGGTACTCATGTAATTGTCGGGTATTGG 921
|| ||||||||||| ||||||||||||| ||||||||||||| ||||||| || ||||||
Sbjct 904 GATCGTAGTTCAGGAAATTGGTGGTTGAAATTTGGTACTCATTTAATTGTTGGATATTGG 963
Query 922 CCTTCTTTATTGTTCAATCGTTTACGA-ATTGGTGCGA-CCGAAGTTGAATGGGGAGGCG 979
||||||| |||||||||||| ||| || || | ||||| || ||||| | ||||||||||
Sbjct 964 CCTTCTTCATTGTTCAATCGCTTAGGAGAT-GCTGCGAGCC-AAGTTCATTGGGGAGGCG 1021
Query 980 AAATAGTAAATTTAAAGGAGAACAACCAACACACGTCAACACACATGGGAAGTGGGTCAT 1039
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1022 AAATAGTAAACGTAAAGGAGAACAACCAACACACGTCAACACAAATGGGAAGTGGGTCGT 1081
Query 1040 TTGCAATAAATGGATATAGAAAAGCTAGTTATTTTAGGAATATTTTCGTAACT-GATGAA 1098
||||||||||||||| |||||| ||||||||||||||||||||||| ||| || ||||||
Sbjct 1082 TTGCAATAAATGGATTTAGAAAGGCTAGTTATTTTAGGAATATTTTAGTA-CTTGATGAA 1140
Query 1099 AATAATATTACGAAGAAACCTGTAGGTTCTTCTACATTTGTGTCGGAAGAAAGTTGTTAT 1158
|| |||| ||||||| ||||||||||| ||||||||| || | |||||| ||||||||||
Sbjct 1141 AACAATACTACGAAGCAACCTGTAGGTGCTTCTACATCTGAGACGGAAGGAAGTTGTTAT 1200
Query 1159 GACATAAGGTATCGCACTGAACAAGCCTGGGGAAGTTTCTTTTACTATGGTGGTCCTGGT 1218
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 GACATCAGGTATCGCACTGATCAAGCATGGGGAAGTTTCTTTTACTATGGTGGTCCTGGT 1260
Query 1219 CGAAGTCCTTTCTGT 1233
||||||||||| |||
Sbjct 1261 CGAAGTCCTTTTTGT 1275
> AT2G17750.1 | Symbols: NIP1 | NEP-interacting protein 1 | chr2:7709192-7711151
REVERSE LENGTH=1237
Length=1237
Score = 366 bits (198), Expect = 2e-100
Identities = 893/1209 (74%), Gaps = 125/1209 (10%)
Strand=Plus/Plus
Query 60 GATAGTCACCGGAAGCGAGTCTTCTAATACTCGTGATGCTGAAA-TA-AATCGACTCATG 117
|||||| | || || |||| |||| ||||||||||||| ||| || || | || |
Sbjct 45 GATAGTTTCTGGTAGTGAGTTTTCTGATACTCGTGATGC-AAAAGTAGAA-AAAATCTTA 102
Query 118 AAGAAACTCAACAAACCTTTTCTTAAATCCATCAAGAGTCCAGATGGAGATATCATAGAT 177
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 103 AAGAAACTCAACAAACCTGCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGAC 162
Query 178 TGTGTTCATATGAAAAATCATCCAATTTATGATCATCCTTTATTCAAAAACCACACCATT 237
|| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 163 TGCGTTCATATGAATAATCATCCAATTTATGATCATCCTTTATTCAAAAACTACACGATT 222
Query 238 CAGATGAGACCAACTTCTTACCC-AGAAGGATGGAGCAATAAAGA-T-T-CAGATAATGA 293
||||||| ||||| ||||||||| | |||| | | ||||| || | | |||| || ||
Sbjct 223 CAGATGAAACCAAGTTCTTACCCTA-AAGG-TAAA--AATAATGAATCTTCAGACAAAGA 278
Query 294 AAAACACAA-TATGGTTCCTCAACTTTGGACAATCAATGGAAAATGTCCAAAAAATAGTA 352
||||| || | | || ||||||| |||||| | || || ||||| || ||||| ||||
Sbjct 279 GAAACA-AAGTGTTGTGACTCAACTATGGACAGTTAACGGGAAATGCCCCAAAAACAGTA 337
Query 353 TTCCGATCAGAAGAACGAGAA-AAGAAGATATTTTACGAGCAAAATCCATTG-AAAGGTT 410
||||||||||||||||||||| || |||| ||||| ||| | ||| || | |||| |
Sbjct 338 TTCCGATCAGAAGAACGAGAAGAA-AAGAAATTTTGCGAACCGAATATAT-GCAAAGATA 395
Query 411 TGGaaaaaaaGA-TCCCAACAATA-TCCATCAACATAAA-CGACCAACCAATCCAACTAA 467
|| | ||||||| ||| |||| || | |||| | |||| | | |||| | | ||||
Sbjct 396 TG-ACAAAAAGAATCCAAACA-TAATAAATCATCCTAAAGC-ATCAACTAGT--AACTC- 449
Query 468 CGACGGTGTACATGAGTATGC-CATACTTAAAGTGGAAGTAAATTCTCCTCGAGCTATGT 526
| | | ||||||||| || || | | ||| | ||| ||| | | || | | |
Sbjct 450 C-A---T--ACATGAGTACGCGCAAA-TCCAAGCGAAAGGAAAGT-T--TC-A--TG-G- 494
Query 527 TTTATGGAACCCAAACTTTTATAAATGTGTGGAAGCCTTATGTACAACATAC-AAAAGAA 585
| | |||| | ||||||||| ||||| |||| ||||||| | || ||||||
Sbjct 495 ---A-G---CCCATGCGGATATAAATGTTTGGAAACCTTTTGTACAA-ACACCAAAAGAG 546
Query 586 TTTAGCTTAGCACAAATATGGATG-TCGGCTGGAA-GTTATAGTACTCAACTTGAA-ACC 642
|||||| |||||||||| ||| | | |||||| ||| | | || || || || | |
Sbjct 547 TTTAGCCTAGCACAAATGTGGGTTAT-GGCTGGTCCGTT-T--T-CTGAAGTT-AATAGC 600
Query 643 ATTGAAGCTGGTTGGCAGGTGT-TGACTGCA-CTTTATAATGAT-ACTAACCCTCGATAC 699
||||||||||||||||||||| | | | | | |||| ||| || ||||| |||||
Sbjct 601 GTTGAAGCTGGTTGGCAGGTGTATCAA-G-ATCGTTATGGCGATGAC-AACCCAAGATAC 657
Query 700 TTTGTCTATTGGACTAATGATTCATATATACAACATGGTTGCTATAATACT--ATTTGCC 757
||| | | ||||||| ||| || || || || || || ||| || ||| |||
Sbjct 658 TTTATTTTTTGGACTGCGGATGGGTACC-ACT-CA-GGCTGTTACAAT-CTTGATT-GCC 712
Query 758 CCGGCTTTGTTGTTGTCAACCAAGCATTTGCTCTAGGCGCGGCCGTTC-CTGAA-GTTTC 815
|| |||||| ||||| |||| |||||| || || || |||||| | || |||||
Sbjct 713 AAGGATTTGTTCCTGTCAGCCAAAAATTTGCCCTTGGTGCAGCCGTTAGC--AATGTTTC 770
Query 816 TATCCGT-GATGGTCTACAATACGAAATTTTCACAAGTATATGGAAGGA-CCGTAGTTCA 873
| || | ||||||| ||||||| | |||| ||||| |||||||||||| || | ||||
Sbjct 771 CA-CCTTCGATGGTCAACAATACCATATTTCCACAACTATATGGAAGGATCCAAA-TTCA 828
Query 874 GGGAATTGGTGGTTGAGATTTGGTACTCATGTAATT-GTCGGGTATTGGCCTTCTTTATT 932
|||||||||||||| | ||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct 829 GGGAATTGGTGGTTAAAATTTGGTG---ATG-AATTTGTCGGATATTGGCCTTCCATATT 884
Query 933 GTTCAATCGTTTACGA-ATTGGTGCGACCGAAGTTGAATGGGGAGGCGAAATAGTAAATT 991
|||||| | | || | || |||||||| ||| || | |||||||| |||||| ||||||
Sbjct 885 GTTCAACCATCTAAAAGAT-GGTGCGACAGAAATTCAGTGGGGAGGTGAAATAATAAATT 943
Query 992 T-AAAGGA-GAA-CAACCAACACACGTCAAC-ACACATGGGAAGTGGGTCATTT-GCA-A 1045
| |||| | | || | | ||||| | || | | ||||| ||||| ||||| ||| |
Sbjct 944 TTAAAG-ATGGTGCA-CTA-CACACCACGACGAGA-ATGGGGAGTGGA-CATTTTGCAGA 998
Query 1046 -TAAATGGATAT-AGAAAAGCTAGTTATTTTA-GGAATATTTTCG-TAACTGATGAAAAT 1101
| ||||||| | |||||| |||||||| | ||| | || | ||| ||||||| |
Sbjct 999 GTC--TGGATATCA-AAAAGCAAGTTATTTCAAGGA-TGTTGA-GATAATTGATGAACGT 1053
Query 1102 AATATTACGA-AGAAA-CCT---GTAGGTTCTTCTACATTTGTGTCGGAAGAAAGTTGTT 1156
||||| | | || | ||| | ||||| |||| || || || |||| |||||||
Sbjct 1054 GATATT-C-ATAGTAGTCCTAAAGAAGGTTATTCTT-ATATGA--CGCAAGAGAGTTGTT 1108
Query 1157 ATGACATAAGGTATCGC-ACTGA-ACAAGCCTGGGGAAGTTTCTTTT-ACTATGGTGGTC 1213
|| |||| |||| | || | || | ||| |||||| |||| |||| | |||||||| |
Sbjct 1109 ATAACATCAGGTCTGGCTA-TGCTA-AAGTATGGGGA-GTTTATTTTTATTATGGTGGCC 1165
Query 1214 CTGGTCGAA 1222
| |||||||
Sbjct 1166 CAGGTCGAA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5