BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906456

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19250.1 | Symbols:  | pseudogene, similar to Magnesium-chel...   226    3e-58


> AT2G19250.1 | Symbols:  | pseudogene, similar to Magnesium-chelatase 
subunit chlD, chloroplast precursor (Mg- protoporphyrin 
IX chelatase) (Mg-chelatase subunit D). (Common tobacco), 
similar to SP|O24133 Magnesium-chelatase subunit chlD, chloroplast 
precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase 
subunit D) {Nicotiana tabacum}; blastp match of 78% identity 
and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC Magnesium-chelatase 
subunit chlD, chloroplast precursor (Mg- protoporphyrin 
IX chelatase) (Mg-chelatase subunit D). (Common tobacco) 
{Nicotiana tabacum} | chr2:8352686-8355700 FORWARD LENGTH=3015
Length=3015

 Score =  226 bits (122),  Expect = 3e-58
 Identities = 155/171 (91%), Gaps = 2/171 (1%)
 Strand=Plus/Plus

Query  506   TGAGGAGTAGGAAGGTGGGCTTTAAGATAGCTAAACAAGGTATCTCTCAACAACCTCACT  565
             ||| ||||| ||||||||||| |||||||  |||| ||||| ||||||||||||||||||
Sbjct  2576  TGATGAGTAAGAAGGTGGGCTCTAAGATATTTAAATAAGGTCTCTCTCAACAACCTCACT  2635

Query  566   ATTCTAAGGCATCCTCTGAAAACTCTGGGGCTATAGCAATCAACGAGAACAAAACTGAGA  625
             ||| |||||||  ||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct  2636  ATTATAAGGCA--CTCTGAAAATTCTGGGGCTATAGCAATCAACGAGGACAAGACTGAGA  2693

Query  626   TTAATCAACTTCAAGATTCCACAAACGAGACTGCTTCACTCAGCAGGCAAG  676
             |||||||||||| ||||||  ||||||||||||||||||||||||||||||
Sbjct  2694  TTAATCAACTTCGAGATTCTGCAAACGAGACTGCTTCACTCAGCAGGCAAG  2744


 Score = 93.5 bits (50),  Expect = 3e-18
 Identities = 58/62 (94%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  701   ATGAGCTTAATGCAACTTCTAGAAGACAAAGAGACAAGAAGAAGACGACTTTGAAGCAGT  760
             |||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct  2928  ATGAGCTTAAAGCAACTTCTAGAAGACAAAGAGACAAGAAGAGGACGAGTTTGAAGCACT  2987

Query  761   AA  762
             ||
Sbjct  2988  AA  2989



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37022566339


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5