BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906495

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16790.1 | Symbols:  | P-loop containing nucleoside triphosp...   917    0.0  


> AT2G16790.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr2:7283957-7285237 
REVERSE LENGTH=807
Length=807

 Score =  917 bits (496),  Expect = 0.0
 Identities = 540/562 (96%), Gaps = 0/562 (0%)
 Strand=Plus/Plus

Query  1    ATGTAGGCTAACAATGACGTGACAGGTAAAGTCATTGTGATTATGGGCGTAAGCGGAGCA  60
            |||| |||||| ||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct  102  ATGTCGGCTAAAAATGACGTGACAGGTAAAGTCATTGCGATTATGGGCGTAAGTGGCGCA  161

Query  61   GGGAAATCTACCATAGGTAAACTGTTGGGGAAAGCTCTATCTTGTGATTTTCTTGATGCT  120
            ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  162  GGGAAATCTACCATAGGTAAAATGTTGGGGAAAGCTCTATCTTGCGATTTTCTTGATGCT  221

Query  121  GATGATTTTCATTCTTTATCGAACAGAGATAAGATGCGTCAAGGCATTGCTCTTTCAGAC  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  222  GATGATTTTCATTCTTTATCAAACAGAGATAAGATGCGTCAAGGCATTGCTCTTTCAGAT  281

Query  181  GAAGACCGAATGCCATGGCTTGAAAAAATACAAGAGAGTTTGCGAAAACGTTTACTCGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  GAAGACCGAATGCCATGGCTTGAAAAAATACAAGAGAGTTTGCGAAAACGTTTACTCGAT  341

Query  241  GGAGAAACCGTTGTTCTCGCATGTTCTTCATTGAGAAAACAGTATAGAGAAATCTTGAGA  300
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  342  GGAGAAACCGTTGTTCTCGCATGTTCTTCTTTGAGAAAACAGTATAGAGAAATCTTGAGA  401

Query  301  GGCTCTGATCCTGATTACGAACAGGGAAGCTATTCGAGTTGCAAGGTTAAGTTTGTATTA  360
            || ||||||||||||||| ||| |||||||||| ||||||||||||||| |||||| |||
Sbjct  402  GGTTCTGATCCTGATTACAAACCGGGAAGCTATACGAGTTGCAAGGTTACGTTTGTTTTA  461

Query  361  TTGGAAGGTAATGCAGAGGTGATTGCTGCTCGGTTACAGAAGAGAGCTTCCGAGGGAGAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  462  TTGGAAGGTAATGCAGAGGTGATTGCTGCTCGGTTACAGAAGAGAGCTTCCGAGGAAGAA  521

Query  421  CATTTCATGCCTCTTACTCTTCTTCAGTCTCAGTTTGATCTGCTTCAAGCTGATGAATGC  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  522  CATTTCATGCCTCTTACTCTTCTTCAGTCTCAGTTTGATCTGCTTCAAGCTGATGAATGT  581

Query  481  GAAAAGATATTCAAAATCAGTGTGATTCTAAGCCCTGAAGTTATAGTCAGTACAATTCTT  540
            |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  582  GAAAAGATATTCAAAATCAGTGTGGTTCTAAGCCCTGAAGTTATAGTCAATACAATTCTT  641

Query  541  GAAATGCTAGGAAATTCTTTGA  562
            |||||| ||| |||||||||||
Sbjct  642  GAAATGGTAGCAAATTCTTTGA  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5