BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906509

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55160.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   178    2e-44


> AT1G55160.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G19530.1); 
Has 63 Blast hits to 63 proteins in 14 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:20578406-20580010 FORWARD LENGTH=919
Length=919

 Score =  178 bits (96),  Expect = 2e-44
 Identities = 162/193 (84%), Gaps = 7/193 (4%)
 Strand=Plus/Plus

Query  46   GTTATCtttttttttA-AAGCTAAGAAAGAA-GACAGAGATTTTGTAAACGAAAAGACAG  103
            |||||| | || |||| || |||||||| || |||  ||||  ||||   ||| |||| |
Sbjct  405  GTTATC-TGTTCTTTAGAA-CTAAGAAA-AAGGACCTAGATCCTGTAGTTGAAGAGACGG  461

Query  104  CTGCTAAATATG-GTTTAGTTGCAGCTCCTATTATTGTGGAAAAGACTGCATCTTCCACA  162
            |||||||||  | ||| ||||||||||||| ||| ||||||||| |||   |||||||||
Sbjct  462  CTGCTAAAT-CGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACA  520

Query  163  ATGGTTGCCGAGCCAGTGGTGGTCAAGGCATGTGAGCCAATTCTGGAGAAACAACAACGT  222
             ||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct  521  GTGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGT  580

Query  223  GAGCTCTTCAAAT  235
            |||||||||||||
Sbjct  581  GAGCTCTTCAAAT  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5