BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906520
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16980.2 | Symbols: | Major facilitator superfamily protein... 710 0.0
AT2G16970.1 | Symbols: MEE15 | Major facilitator superfamily pr... 407 1e-112
> AT2G16980.2 | Symbols: | Major facilitator superfamily protein
| chr2:7376349-7381097 FORWARD LENGTH=1566
Length=1566
Score = 710 bits (384), Expect = 0.0
Identities = 634/755 (84%), Gaps = 16/755 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAATATAGAATTGGAGAGCTTAGACACATTTTGACT-ATGGTTTTTC-TGTCGG 58
||||| | || |||| |||||||||| |||||| | || | | || ||||| ||||||
Sbjct 28 ATGGAGGTATTTAGACTTGGAGAGCTGAGACACCTACTG-GTGACGG-TTTTCTTGTCGG 85
Query 59 GGTTTG-CTATTTTCTTGGTGAGGCCGGTGATGACTGACGTCACCGTTGCTGCCGTTTGC 117
|| | | | | | |||| | ||||| |||||||||||||||||||| || || ||||||
Sbjct 86 GGCTCGCCGA-ATACTTGATAAGGCCAGTGATGACTGACGTCACCGTAGCCGCGGTTTGC 144
Query 118 TCCGGCATAAATGATTCATGTTCTCTAGCCGTTTACCTCACCGGAGTTCAACAAGTGACG 177
|||||| || | |||||||||||| | ||||| || ||||||||||| ||||||||||||
Sbjct 145 TCCGGCCTAGACGATTCATGTTCTTTGGCCGTCTATCTCACCGGAGTACAACAAGTGACG 204
Query 178 GTGGGGCTAGGGACAATGGTAATGATGCCAGTGATCGGGAGTCTATCCGACCGATATGGA 237
|| || | ||||||||||||||||||||||||||||| | |||||| ||| ||||||||
Sbjct 205 GTAGGAATGGGGACAATGGTAATGATGCCAGTGATCGGCAATCTATCGGACAGATATGGA 264
Query 238 ATCAAAGCATTGCTCACTCTTCCCATGTGCCTCTCTATTCTTCCTCCAGCGATATTAGGG 297
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 265 ATCAAAGCAATGCTCACTCTTCCCATGTGCCTCTCTGTTCTTCCTCCAGCAATATTAGGG 324
Query 298 TATAGAAGGGATACGAATTTTTTCTTT-GCATTTTATATAACCAAGACTCTATTCGATAT 356
|| ||||||||||| ||||| || || ||||||||| ||| |||||| |||||||||||
Sbjct 325 TACAGAAGGGATACCAATTTCTT-TTACGCATTTTATGTAATCAAGACCCTATTCGATAT 383
Query 357 GGTCTGCCGAGGCGCTGTTGACTGTCTCTCTCAA-GCTTATGTGGCGAAAAATGTTCAGG 415
|||||||| |||| | ||||||||||| || || ||||||||||| ||||||||||| |
Sbjct 384 GGTCTGCCAAGGCACCATTGACTGTCTCGCT-AACGCTTATGTGGCAAAAAATGTTCATG 442
Query 416 GCaaaaaaaGAATAGCAATGTTTGGAGTTTTGGCCGGTGTCAAAACAATTTCCGGAGTTT 475
||| |||||||||| ||||||| ||| |||| || ||||||| | |||||||||||||
Sbjct 443 GCACAAAAAGAATATCAATGTTCGGAATTTTAGCAGGTGTCAGCTCGATTTCCGGAGTTT 502
Query 476 TTGCAACATTCTCAGCTCGTTTTCTA-CCTGTAGCTTCCACTTTTCAGGTTGCAGCTATA 534
|||| || | |||||||||||| || || ||||||| |||||||||||||||||||||
Sbjct 503 GTGCATCACTATCAGCTCGTTTTTTATCCA-TAGCTTCGACTTTTCAGGTTGCAGCTATA 561
Query 535 TCATTATTAATTGGTCTGGTGTACATGAGAGTTTTCCTCAAAGATAGATTACACGATGAA 594
|||||||| ||||| |||||||| ||||| |||||||| ||||| || ||||| ||||
Sbjct 562 TCATTATTCATTGGCCTGGTGTATATGAGGGTTTTCCTAAAAGAGAGGTTACAAGATGCT 621
Query 595 GATAACGACAATTGTGG-TGATGGTGGTAGTAGTAGCAA-TCATCAAAAAGTTCATAAAG 652
||| | || || | | |||| ||||| || |||| || ||||||| | |||||||| |
Sbjct 622 GATGATGATGAT-GAAGCTGATAGTGGTGGTTGTAG-AAGTCATCAAGAGGTTCATAATG 679
Query 653 GTAGTGATCTAAGGATGTTAGCAAAGCCAATTCTAAGAGACGCACCAACAAAGACACATG 712
|| ||||||||| ||||||| | |||| || |||||||| |||||||||||||||||||
Sbjct 680 GTGGTGATCTAAAGATGTTAACTGAGCCGATACTAAGAGATGCACCAACAAAGACACATG 739
Query 713 TCTTCAACACTAAGTACTCGTCTTTGAAAAATATG 747
||||||||| |||||| ||||||| |||| |||||
Sbjct 740 TCTTCAACAGTAAGTATTCGTCTTGGAAAGATATG 774
> AT2G16970.1 | Symbols: MEE15 | Major facilitator superfamily
protein | chr2:7369549-7375528 FORWARD LENGTH=1341
Length=1341
Score = 407 bits (220), Expect = 1e-112
Identities = 314/360 (87%), Gaps = 4/360 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAATATAGAATTGGAGAGCTTAGACACATT-TTGACTATGGTTTTTCTGTCGGG 59
||||| ||||||||| |||||||||| |||||| || |||| | |||||| ||||||||
Sbjct 1 ATGGAGGAATATAGACTTGGAGAGCTGAGACAC-TTGCTGACAACGGTTTTCCTGTCGGG 59
Query 60 GTT-TGCTATTTTCTTGGTGAGGCCGGTGATGACTGACGTCACCGTTGCTGCCGTTTGCT 118
|| | | | |||||||||| ||| |||||||||||||||||||| || || |||||||
Sbjct 60 ATTCTCCGA-GTTCTTGGTGAAGCCAGTGATGACTGACGTCACCGTCGCCGCGGTTTGCT 118
Query 119 CCGGCATAAATGATTCATGTTCTCTAGCCGTTTACCTCACCGGAGTTCAACAAGTGACGG 178
||||| |||| || |||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 119 CCGGCCTAAACGAAACATGTTCTCTCGCCGTCTATCTCACCGGAGTAGAACAAGTGACGG 178
Query 179 TGGGGCTAGGGACAATGGTAATGATGCCAGTGATCGGGAGTCTATCCGACCGATATGGAA 238
| || || |||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 179 TAGGACTGGGGACAATGGTAATGATGCCGGTGATCGGGAATCTATCCGATAGATATGGAA 238
Query 239 TCAAAGCATTGCTCACTCTTCCCATGTGCCTCTCTATTCTTCCTCCAGCGATATTAGGGT 298
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 239 TCAAAACATTACTCACTCTTCCGATGTGCCTCTCTATTCTTCCTCCAGCGATATTAGCGT 298
Query 299 ATAGAAGGGATACGAATTTTTTCTTTGCATTTTATATAACCAAGACTCTATTCGATATGG 358
||||||||||||||||||| |||| || ||||| |||||||||| ||||||||||||||
Sbjct 299 ATAGAAGGGATACGAATTTCTTCTACGCGTTTTACATAACCAAGATTCTATTCGATATGG 358
Score = 353 bits (191), Expect = 2e-96
Identities = 265/301 (88%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 746 TGTATTCTATGAAAGCTCGTTTTGGGTTCAAGAAAAATGACTTTGCTGAGCTCTTTCTAT 805
|||||| | | |||||||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 800 TGTATTTTCTAAAAGCTCGTTTTGGGTTCAACAAAAATGACTTTGCTGAGCTCATACTGT 859
Query 806 TGGACCA-CATCATTGGCTCCACCTCCCAGCTGTTTATACTGCCGATATTGGTTTCTGCC 864
||| | |||||||||||||| ||| ||||| |||||| |||||| |||||||||||||
Sbjct 860 TGG-TTACCATCATTGGCTCCATCTCTCAGCTCTTTATATTGCCGAAATTGGTTTCTGCC 918
Query 865 ATTGGAGAACGTTGGGTGTTATCAACAGGGCTTCTTATGGAATT-TTTAAACGCAGCTTG 923
|| ||||||||| |||| |||||||||||||||||||||| ||| | |||||||||||||
Sbjct 919 ATAGGAGAACGTAGGGTTTTATCAACAGGGCTTCTTATGG-ATTCTGTAAACGCAGCTTG 977
Query 924 TCTTAGTGTTGCTTGGTCAGCATGGGTTCCTTATGCCACGACCGTGCTTGTACCGGGAGC 983
||| |||||| | ||||||||||||||||||||||||||||| ||||||||||| | | |
Sbjct 978 TCTCAGTGTTTCGTGGTCAGCATGGGTTCCTTATGCCACGACAGTGCTTGTACCCGTAAC 1037
Query 984 CATGTTCGTGATGCCATCAATTTGTGGTATTGCCTCAAGACAAGTTGGATCCGGTGAACA 1043
|||||||| |||||||| ||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 1038 AATGTTCGTAATGCCATCTGTTTGTGGTATTGCTTCAAGACAAGTGGGACCCGGTGAACA 1097
Query 1044 G 1044
|
Sbjct 1098 G 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5