BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906528

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17033.2 | Symbols:  | pentatricopeptide (PPR) repeat-contai...   261    1e-69


> AT2G17033.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing 
protein | chr2:7401193-7403646 FORWARD LENGTH=1969
Length=1969

 Score =  261 bits (141),  Expect = 1e-69
 Identities = 162/172 (94%), Gaps = 1/172 (1%)
 Strand=Plus/Plus

Query  1     ATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGATCAGACTTAGA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1264  ATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGACCAGACTTAGA  1323

Query  61    TTTAGCGAAGAAAAGTGTGTGATTCCTGCCGAGATAGTAGTTATTTCTGGATCCGGAAAG  120
             |||||||||||||||||||| |||||||| ||||| |||||| |||||||||| ||||||
Sbjct  1324  TTTAGCGAAGAAAAGTGTGTAATTCCTGCAGAGATTGTAGTTGTTTCTGGATCTGGAAAG  1383

Query  121   CACAGCAATGTAAGAGGAGAGTCACCGGTAAAATCGCTGGTTAAAAA-ATAA  171
             || |||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct  1384  CATAGCAATGTAAGAGGAGAGTCACCGGTGAAAGCGCTGGTTAAAAAGATAA  1435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7444599948


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5