BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906575
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 398 7e-110
AT2G17477.1 | Symbols: | Pseudogene of AT3G22350; F-box family... 302 6e-81
AT3G22700.1 | Symbols: | F-box and associated interaction doma... 195 1e-48
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 193 4e-48
AT3G22710.1 | Symbols: | F-box family protein | chr3:8026202-8... 121 2e-26
AT4G17200.1 | Symbols: | F-box and associated interaction doma... 69.4 7e-11
AT3G49520.1 | Symbols: | F-box and associated interaction doma... 62.1 1e-08
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 58.4 1e-07
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 56.5 5e-07
AT1G54550.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 398 bits (215), Expect = 7e-110
Identities = 509/642 (79%), Gaps = 55/642 (9%)
Strand=Plus/Plus
Query 309 GGAATCTAGGTGGATCCAACGCAAAAATGGTTACGA-GAGATACTCTAGGTTTGCTCTAG 367
|||| | ||||||||||||| |||| ||| | | | ||||||||||| |||||||||||
Sbjct 372 GGAAACCAGGTGGATCCAACTCAAAGATGAATGC-AGGAGATACTCTACGTTTGCTCTAG 430
Query 368 GATACGAGAACAACAAATCTTG-C--AGTAGCTACAAATTCTTGATGTGTT-GGGTTTG- 422
||||||| |||||||||| ||| | ||| ||||||| |||||| || || ||||| |
Sbjct 431 GATACGAAAACAACAAATTTTGTCGTCGTAACTACAAAATCTTGAGGTATTGGGGTTGGT 490
Query 423 TT-ACGATGGCAAACTAGGCGACGAAGACGGA-GTTTTGGGGTTTGAAATCTATGAGTTT 480
|| ||||| || || || ||||| | |||| | ||| |||||||||| ||||| |||
Sbjct 491 TTCACGATCACATACCAGACGACG--G-CGGACG-TTTCAGGTTTGAAATATATGACTTT 546
Query 481 AGCTCTGATTCATGGAGGGTTCTTGATGACGTCGCTTCCGACTGCTTTCCATCTGCAAAT 540
|| ||||||||||||| |||||||||||||||| || ||| |||| ||| | | || |
Sbjct 547 AGATCTGATTCATGGAAGGTTCTTGATGACGTCCCTGATGACCGCTTCCCACCAGTAAGT 606
Query 541 GGCGTGTCTTTGAAGGGAAATGCTTAC-----TGG--CT--TAAAGAA-GACTTAC-T-C 588
| ||||||||| |||||||| ||||| ||| || |||| || ||||| | | |
Sbjct 607 GTCGTGTCTTTAAAGGGAAACACTTACTGGTTTGGTTCTAATAAA-AAGGACTT-CTTAC 664
Query 589 -T-GTTTTGATTTTACAATTA-AGAGATTTAAACGTGTTTGTCTTCCGCCAGTTC-CAAG 644
| ||||||||||||||| | |||||||||| | | || ||||||||||| || | ||
Sbjct 665 GTAGTTTTGATTTTACAA-CAGAGAGATTTAATCATATTGGTCTTCCGCCA--TCTCGAG 721
Query 645 -CCGTGATTGTATGGCTCTATCAGTTGTTAGAGAAGAACAACTCTCATTGTTACATCG-G 702
| || || ||||||||||||||||||| ||||||||||||||||| ||||||| | |
Sbjct 722 ATCATGGTTTTATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACA-AGAG 780
Query 703 ATTCAACATACATCGAAGATGGAGATATATGTAACCAAGAAAGTTGATACTGAAGAAGCT 762
||| | ||||| ||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 781 ATT---GAGACATCAAAGATGGAGATATTTGTAACCAATAAAGTTGGTACTGAAGAAGCT 837
Query 763 GATTTGTTGTGGAGCAAATCCTCAACAGTAAG-TTTACCCATTGGAGGTCATAAAGGTTT 821
| |||||||||||||||||||| | ||| | |||||||||||| |||||| | ||
Sbjct 838 GCTTTGTTGTGGAGCAAATCCTTTATAGT-GGATTTACCCATTGGCGGTCAT---TG-TT 892
Query 822 C-AATGTTTTCTCGAGTCTATTAATCGACGAGGAGAAGAAAGTGGCCTTGCATTGTAATA 880
| | |||||| ||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 893 CTGAGGTTTTCGCGAGTCTTTTAATCAACGAGGAGAAGAAAGTGGCCTTGTGTTGTAAT- 951
Query 881 TCA-ATTT-GAAGACC-A-GGTGTAACATGTTATACACTATT 918
| | |||| | ||||| | || | ||| || ||| |||||||
Sbjct 952 TTAGATTTCG-AGACCGACGG-G-AACTTGATATTCACTATT 990
Score = 224 bits (121), Expect = 1e-57
Identities = 246/304 (81%), Gaps = 18/304 (6%)
Strand=Plus/Plus
Query 7 ATGTCCGATCTTCCTCCGGAACTGTTAGAAGAAATACTCTCTAGGGTTCCAGCCACATGT 66
||||| ||||||||| ||| || |||||||||||||||| |||||| | ||||||| |
Sbjct 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60
Query 67 TTGCAACGAGTACGATCTACTTGCAAACGATGGAACGA-TTTGTTC-AAAGACGGAAGAT 124
|| ||||| |||||||||||||||||| ||||||| | ||| ||| ||| || |||| |
Sbjct 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAAC-ACTTTATTCAAAAAAC-GAAGTT 118
Query 125 TCACG-GAGAAGCACTTTCGTAAAGCTGAAAAGGAGTCTTTGATACTCATGTTGAAGGAG 183
||| | |||| ||||||| || |||| |||||||||| || | |||||||||||||||
Sbjct 119 TCA-GCCAGAAACACTTTCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAG 177
Query 184 CTTA-A-ACTTTGCTCAATCG-GCGTCAATCTCAACT-TTTCACCTCCATCTGTAGAGTT 239
|| | | |||||||||| | |||||||||| | |||| |||||||||||||||||
Sbjct 178 --TACAGAGTTTGCTCAAT-GAATATCAATCTCAA-TGTTTCTCCTCCATCTGTAGAGTT 233
Query 240 TCAAGGTACACTTGACCTAAAAGAT--T-CCCACCCTAATTCAGAACAAGTAG-GACAAT 295
|||||||||||||| | |||||||| | |||| |||||| || |||||| | || | |
Sbjct 234 TCAAGGTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAGT 293
Query 296 CGAA 299
||||
Sbjct 294 CGAA 297
> AT2G17477.1 | Symbols: | Pseudogene of AT3G22350; F-box family
protein | chr2:7589808-7590264 FORWARD LENGTH=457
Length=457
Score = 302 bits (163), Expect = 6e-81
Identities = 363/450 (81%), Gaps = 52/450 (12%)
Strand=Plus/Plus
Query 460 GGGTTTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACGTCGCTTCC 519
|||| ||||||||||||| |||||||||||||||||||| ||||||||| | || | |||
Sbjct 1 GGGTATGAAATCTATGAGCTTAGCTCTGATTCATGGAGGTTTCTTGATGTCCTC-CCTCC 59
Query 520 GACTGCTTT-C--CATCTGCAAATGGCGTGTCTTTGAA--G---GGAAATGCTTACTGGC 571
||||||||| | ||||||| ||||| |||||||||| | ||||||||||| ||||
Sbjct 60 GACTGCTTTCCATCATCTGCTAATGGTTTGTCTTTGAAGGGATCGGAAATGCTTATTGGC 119
Query 572 TT-AAA-G-A-AGACTTACTCTGTTTTGATTTT---A-C---A-A-TTA-A-G---A--- 610
|| ||| | | | ||||| | ||||||||||| | | | | ||| | | |
Sbjct 120 TTAAAAGGTACTG-CTTACACAGTTTTGATTTTACAACCGAGAGATTTATATGAACATTT 178
Query 611 GA-T--TTAAACGTGTTTGTCTTCCGCCAGTTC-CAAGCCGTGATTGTATGGCTCTATCA 666
| | |||||| | |||||||||||||| ||| || |||||||| |||||||||||||
Sbjct 179 TACTGCTTAAACATTTTTGTCTTCCGCCATTTCTGAA-CCGTGATTATATGGCTCTATCA 237
Query 667 GTTGTTAGAGAAGAACAACTCTCATTGTTACATCGGATTCAACAT-ACATCGAAGATGGA 725
|||| |||||||||| |||||||| |||||||||||||| || | ||||||||||||
Sbjct 238 GTTGATAGAGAAGAAAAACTCTCACTGTTACATCGGATT---GATGA-ATCGAAGATGGA 293
Query 726 GATATATGTAACCAAGAAAGT---T-GATACTGAAGAAGCTGATTTGTTGTGGAGCAAAT 781
||||||||||||||||||||| | |||||||| |||| || |||||||||||||||||
Sbjct 294 GATATATGTAACCAAGAAAGTACGTAGATACTGATGAAGTTGCTTTGTTGTGGAGCAAAT 353
Query 782 CCTCAACAGTAAG-TTTACCCATTGGAGGTCATAAAGGTTTCAATG-TTTTCTCGAGTCT 839
||| ||||| | |||||||||||| || ||| |||||| | | ||| | |||||||
Sbjct 354 TCTCTACAGT-GGATTTACCCATTGGTGG---TAATGGTTTCGA-GCTTTACACGAGTCT 408
Query 840 ATTAATCGACGAGGAGAAGAAAGTGGCCTT 869
|||||| |||||||||||||||||||||||
Sbjct 409 ATTAATTGACGAGGAGAAGAAAGTGGCCTT 438
> AT3G22700.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8024798-8025814 REVERSE LENGTH=1017
Length=1017
Score = 195 bits (105), Expect = 1e-48
Identities = 228/284 (80%), Gaps = 21/284 (7%)
Strand=Plus/Plus
Query 7 ATGTCCG-ATCTTCCTCCGGAACTGTTAGAAGAAATACTCTCTAGGGTTCCAGCCACATG 65
|||| || |||||||| ||| || |||| ||||||||||||||||||||||||||||
Sbjct 1 ATGT-CGAATCTTCCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACATC 59
Query 66 TTTGCAA-CGAGTACGATCTACTTGCAAACGATGGAACGATTTGTTCAAAGACGGAAGAT 124
| | ||| ||| ||||||| ||||| | || |||||||| ||| || |||||| ||||||
Sbjct 60 TCT-CAAACGATTACGATCGACTTGTAGACAATGGAACGCTTTATTGAAAGACCGAAGAT 118
Query 125 TCACGGAGAAGCACTTTCGTAAAGCTGAAAAGGAGTCTTT-GATACTCATGTTGAAGGAG 183
|||| |||||||||||||||||||| |||||||||| | | | ||||||||||| ||
Sbjct 119 TCACAGAGAAGCACTTTCGTAAAGCACCAAAGGAGTCTCTAGTT-CTCATGTTGAA--AG 175
Query 184 CTTAAACTTTGCTCAATCGGCGTCAATCTCAACTTTTCACCTCCATCTGTAGAGTTTCAA 243
||| | || | ||||||||||||| || | ||||||||| |||||||| ||
Sbjct 176 ---AAA-T------AA--G-CGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAAA 222
Query 244 GGTACACTTGACCTAAAAGATTCCCACCCTAATTCAGAACAAGT 287
| | |||||| | |||| |||||||| ||||||||||||||||
Sbjct 223 GATGCACTTGGCTTAAAGGATTCCCATTCTAATTCAGAACAAGT 266
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 193 bits (104), Expect = 4e-48
Identities = 235/296 (79%), Gaps = 18/296 (6%)
Strand=Plus/Plus
Query 1 ATGATGATGTCCGATCTTCCTCCGGAACTGTTAGAAGAAATACTCTCTAGGGTTCCAGCC 60
|||||||||||||||||| || ||| || |||| ||||||||||||||||||||||||
Sbjct 1 ATGATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCC 60
Query 61 ACATGTTTGCAA-CGAGTACGATCTACTTGCAAACGATGGAACGATTTGTTCAAAGAC-- 117
|||| | | ||| ||| |||||||||||||||||| |||||||| ||| || ||| ||
Sbjct 61 ACATCTCT-CAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCC 119
Query 118 GGAAGATTCACGGAGAAGCACTTTCGTAAAGCTGAAAAGGAGTCTTTGATACTCATGTTG 177
|| |||| || ||||||| |||| |||||| ||||||||| || | |||||||||
Sbjct 120 GG--GATTTACCAAGAAGCAATTTCTTAAAGCACCAAAGGAGTCACTGGTTCTCATGTTG 177
Query 178 AAGGAGCT-TAAAC-TTTGCTC-AATCGG-CGTCAATCTCAACTTTTCACCTCCATCTGT 233
|||||| | || | |||| || ||| | || |||||||| | |||| |||| ||| |
Sbjct 178 AAGGAG-TATAG-CGTTTG-TCCAAT-GATCGCCAATCTCAGCGTTTCTGCTCCGTCTAT 233
Query 234 AGAGTTTCAAGGTACACTTGACCTAAAAGA-TTC-CCACCCTAATTCAGAACAAGT 287
||||||| ||||| ||||| ||||||| || || || || || ||||||| ||||
Sbjct 234 AGAGTTTAAAGGTGCACTTAACCTAAA-GAATTATCCTCCTTA-TTCAGAAGAAGT 287
Score = 145 bits (78), Expect = 1e-33
Identities = 184/232 (79%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 349 TACTCTAGGTTTGCTCTAGGATACGAGAACAACAAATCTTGCAGTAGCTACAAATTCTTG 408
||||||||||||||||||||||||||||| ||||||| | || ||| ||||||| |||||
Sbjct 409 TACTCTAGGTTTGCTCTAGGATACGAGAAAAACAAATATGGCCGTATCTACAAAATCTTG 468
Query 409 ATGTGTTGGGTTTGTTACGATGGCA--AACTAGGCGACGAAGACGGAGTTTTGGGGTTTG 466
| |||||||| | || || || || |||| ||| ||| | | | | | | ||||
Sbjct 469 AGGTGTTGGGATCGTCACAATT-CACCAACT-GGC--CGA-GTTG-A-T---GAG-TTTG 517
Query 467 AAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACGTCGCT-TCCGACTGC 525
||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||
Sbjct 518 AAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCTCTT-GATTGC 576
Query 526 TT--TC-CATCTGCAAAT-GGCGTGTCTTTGAAGGGAAATGCTTACTGGCTT 573
| |||| || || ||||| ||||| ||||||||| |||| ||||||
Sbjct 577 CACATAGCATCA-CATATTGGCGTTTCTTTCAAGGGAAATACTTATTGGCTT 627
Score = 62.1 bits (33), Expect = 1e-08
Identities = 36/37 (97%), Gaps = 1/37 (3%)
Strand=Plus/Plus
Query 1017 ATTCATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 1053
||| |||||||||||||||||||||||||||||||||
Sbjct 1054 ATT-ATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 1089
> AT3G22710.1 | Symbols: | F-box family protein | chr3:8026202-8027274
REVERSE LENGTH=981
Length=981
Score = 121 bits (65), Expect = 2e-26
Identities = 137/170 (81%), Gaps = 12/170 (7%)
Strand=Plus/Plus
Query 592 TTTGATTTTACAATTA-AGAGATTTAAACGTGTTTGTCTTCCGCCAGTTCCAAGCCG-TG 649
||||||||||||| | ||||||| |||||| | | |||||| || ||||||| | ||
Sbjct 502 TTTGATTTTACAA-CAGAGAGATTCAAACGTCTACGCCTTCCG-CATTTCCAAGATGTTG 559
Query 650 ATTGTATGGCTCTATCAGTTGTTAGAGAAGAACAACTCTCATTGTTACATCGGATTCA-A 708
| ||||| ||||||||||||||||||||||||||||||| | |||||| ||| || |
Sbjct 560 GTAATATGGATCTATCAGTTGTTAGAGAAGAACAACTCTCAATATTACATTGGACTCGTA 619
Query 709 CATACATCGAAGATGGAGATATATG--TAACCAAGAA-AGTTGATACTGA 755
||||||| ||||||||||| | || |||| || || | ||||||||||
Sbjct 620 -ATACATCAAAGATGGAGAT-T-TGGATAACTAATAACA-TTGATACTGA 665
> AT4G17200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:9651108-9652253 FORWARD LENGTH=1146
Length=1146
Score = 69.4 bits (37), Expect = 7e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 466 GAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATG 508
|||||||| || |||||||||||||||||||||||||||||||
Sbjct 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532
> AT3G49520.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18359584-18360750 FORWARD LENGTH=1167
Length=1167
Score = 62.1 bits (33), Expect = 1e-08
Identities = 84/107 (79%), Gaps = 10/107 (9%)
Strand=Plus/Plus
Query 470 TCTATGAGTTTAGCTCTGATTCATGGA-G--GGTTCTTGATGA-CGTCGCT-T-CCGACT 523
|||| || ||||||||||||||||||| | ||||| |||||| || || | || |
Sbjct 506 TCTACGATTTTAGCTCTGATTCATGGAGGACGGTTCCTGATGATAATCCCTATAGGGA-T 564
Query 524 GCTTTCCATCT-GCAAA-TGGCGTGTCTTTGAAGGGAAATGCTTACT 568
| | ||| | |||| |||||||||||||||||||||||||||||
Sbjct 565 GAACT-CATTTATCAAAGTGGCGTGTCTTTGAAGGGAAATGCTTACT 610
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 478 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 508
|||||||||||||||||||||||||||||||
Sbjct 587 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 617
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1024 TTCAATTATGTTCCAAGTTTGGTTCAAATC 1053
||||||||||||||||||||||||||||||
Sbjct 1079 TTCAATTATGTTCCAAGTTTGGTTCAAATC 1108
> AT1G54550.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20369651-20370986 FORWARD LENGTH=1336
Length=1336
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 478 TTTAGCTCTGATTCATGGAGGGTTCTTGAT 507
||||||||||||||||||||||||||||||
Sbjct 558 TTTAGCTCTGATTCATGGAGGGTTCTTGAT 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5