BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906590

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17600.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   518    3e-146
  AT2G17590.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   100    1e-20 


> AT2G17600.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:7654477-7656219 REVERSE LENGTH=1743
Length=1743

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 305/316 (97%), Gaps = 5/316 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTGCTAATGAAGAAGAGCCAATATGTCGTTTGTCTCATCCAACTCACCCTCACACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1    ATGGCTGCTAATGAAGAAGAGCCAATATGTCGTTTGTCTCATCCAACTCACTCTCACACC  60

Query  61   CTCTCCCGTAGAGCCGGAAGAATCCCTCCATTGGGTTGCTTCGCGTGCGACAAAGAAGAA  120
            ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct  61   CTCTCCCGTAGAGCCGGAAGAATCCCTCCATCGGGTTGCTTCGCATGCGACAAAGAAGAA  120

Query  121  CCCTCACCATGTTCTACCTTCCATTACTCCTGCACCACTTGTGATGTTGAGTTCCACGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  CCCTCACCATGTTCTACCTTCCATTACTCCTGCACCACTTGTGATGTGGAGTTCCACGAT  180

Query  181  ATTTGTCACGTGTATCCGAGGAAGTTCACACACCCTTATCACCTTCAACATCCTCTCACC  240
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  181  ATTTGTCACGTGTATCCGAGGAAGCTCACACACCCTTATCACCTTCAACATCCTCTCACC  240

Query  241  CTCACCACTCAAATCACTGAAATAGAGATCATATCTAACCAAACC--GAATATGGTTACA  298
            ||||||||||||| ||||||||||||||||||||||||  |||||  |||||||||||||
Sbjct  241  CTCACCACTCAAAACACTGAAATAGAGATCATATCTAA--AAACCCCGAATATGGTTACA  298

Query  299  TATTCAAAAAT-GTAA  313
            ||||||||||| ||||
Sbjct  299  TATTCAAAAATTGTAA  314


 Score =  254 bits (137),  Expect = 1e-66
 Identities = 148/153 (97%), Gaps = 1/153 (1%)
 Strand=Plus/Plus

Query  316   GTCCACTGGTTT-AGGTACAAATGCTCAAAAACTGATTGCGACGATGAGATAACGATTCA  374
             |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct  1104  GTCCACTGGTTTCAGGTACAAATGTTCAAAAACTGATTGCGATGATGAGATAACAATTCA  1163

Query  375   GATAGATTTTCGATGCATTTTAGTTCCTGATTGTTTCACCCACAAAAGTCATGAACATCC  434
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1164  GATAGATTTTCGATGCATTTTAGTTCCTGATTGTTTCACCCACAAAAGTCATGAACATCC  1223

Query  435   TTTATTCATCTCCACATCCTATTCTAGAAAAGG  467
             |||||||||||||||||| ||||||||||||||
Sbjct  1224  TTTATTCATCTCCACATCATATTCTAGAAAAGG  1256


> AT2G17590.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:7651130-7653180 REVERSE LENGTH=2051
Length=2051

 Score =  100 bits (54),  Expect = 1e-20
 Identities = 64/69 (93%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  373   CAGATAGATTTTCGATGCATTTTAGTTCCTGATTGTTTCACCCACAAAAGTCATGAACAT  432
             ||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1298  CAGGTAGATGTTAGATGCATCTTAGTTCCTGATTGTTTCACCCACAAAAGTCATGAACAT  1357

Query  433   CCTTTATTC  441
             || ||||||
Sbjct  1358  CCCTTATTC  1366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5