BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906603
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17723.1 | Symbols: | Defensin-like (DEFL) family protein |... 294 2e-79
> AT2G17723.1 | Symbols: | Defensin-like (DEFL) family protein
| chr2:7700134-7700675 FORWARD LENGTH=267
Length=267
Score = 294 bits (159), Expect = 2e-79
Identities = 209/233 (90%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 7 AGCATATTCTTTAAGCTTATGTTATTGGTTTCTCTTCTAGTCATTACCTTCCGACAAAAC 66
|||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |||||| |
Sbjct 10 AGCATATTCTTTAAGCTTCTGTTATTGGTTTCTCTTTTAGTCGTTATCTTCAGACAAAGC 69
Query 67 TATGCAGTCGCGGATTATTGTGATAGAGACGATGACTGCAAGCCAGTATGCATGAGACCG 126
||||||||||| ||||||||| ||||||| | |||||| |||| |||||| | ||||||
Sbjct 70 TATGCAGTCGCCGATTATTGTAATAGAGATGCTGACTGTAAGCGGGTATGCTTAAGACCG 129
Query 127 TACGCTTGCAACTTGACCCGTCACGTTTGTATGTGTCGTCCAAATGATGTCAGTTCTTCT 186
||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 130 TACGCATGCAACTTAACCCGTCACCTTTGTATGTGTCATCCAAATGATGTCAGTTCTTCT 189
Query 187 AAACAACGTTGTATTCCAGAACATAAAGGTTGTGGA-A-G-AGGACCTCCACC 236
||||||| ||||||||||||||||||||||| |||| | | ||||||||||||
Sbjct 190 AAACAACATTGTATTCCAGAACATAAAGGTTTTGGAGAAGGAGGACCTCCACC 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5