BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906606
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17750.1 | Symbols: NIP1 | NEP-interacting protein 1 | chr2:... 1919 0.0
> AT2G17750.1 | Symbols: NIP1 | NEP-interacting protein 1 | chr2:7709192-7711151
REVERSE LENGTH=1237
Length=1237
Score = 1919 bits (1039), Expect = 0.0
Identities = 1146/1197 (96%), Gaps = 9/1197 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTGCTCGTTTTGTGCTCAGCATTCTGATCGTAGCGGCCATAGTTTCTGGTAGT 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGATGATTGCTCGTTTTGTGCTCAGCATTCTAATCGTAGCGGCGATAGTTTCTGGTAGT 60
Query 61 GAGTTTTCTAATACTCGTGATGCAAAAGTAGAAAAAATCTTAAAGAAACTCAACAAACCT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGTTTTCTGATACTCGTGATGCAAAAGTAGAAAAAATCTTAAAGAAACTCAACAAACCT 120
Query 121 GCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGACTGCGTTCATATGAATAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGACTGCGTTCATATGAATAAT 180
Query 181 CATCCAATTTATGATCATCCTTTATTCAAAAACTACACAATTCAGATGAAACCAAGTTCT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CATCCAATTTATGATCATCCTTTATTCAAAAACTACACGATTCAGATGAAACCAAGTTCT 240
Query 241 TACCCTAAAGGTCAAAATAATGAATCTTCAGAGAGAGAGAAACAAAGTGTTGTGACTCAA 300
|||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 241 TACCCTAAAGGTAAAAATAATGAATCTTCAGACAAAGAGAAACAAAGTGTTGTGACTCAA 300
Query 301 CTATGGACAGTTAACGGGAAATGTCCCGAAAACAGTATTCCGATCAGAAGAACGAGAAGA 360
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 301 CTATGGACAGTTAACGGGAAATGCCCCAAAAACAGTATTCCGATCAGAAGAACGAGAAGA 360
Query 361 AAAGAAATTTTACGAACCAAATATATGCAAAGATACGACAAAAAGAATCCAAACATAATA 420
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AAAGAAATTTTGCGAACCGAATATATGCAAAGATATGACAAAAAGAATCCAAACATAATA 420
Query 421 AATCATACTAAAGCATCAACTAGTAACTCCATACATGAGTACGCCCAAATCCAAGCGAAA 480
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AATCATCCTAAAGCATCAACTAGTAACTCCATACATGAGTACGCGCAAATCCAAGCGAAA 480
Query 481 GGAAAGTTTCATGGAGCCCATGCGGATATAAATGTTTGGAAACCTTATGTACAAACACCA 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 GGAAAGTTTCATGGAGCCCATGCGGATATAAATGTTTGGAAACCTTTTGTACAAACACCA 540
Query 541 AAAGAGTTTAGCCTAGCACAAATGTGGGTTATGGCTGGTCCGTTTTCTGAAGTTAATAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGAGTTTAGCCTAGCACAAATGTGGGTTATGGCTGGTCCGTTTTCTGAAGTTAATAGC 600
Query 601 GTTGAAGCTGGTTGGCAGGTGTATCAAGATCGTTACGGCGATGACAACCCAAGATACTTT 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GTTGAAGCTGGTTGGCAGGTGTATCAAGATCGTTATGGCGATGACAACCCAAGATACTTT 660
Query 661 ATTTTTTGGACTGCGGATGGGTACCACTCAGGCTGTTACAATCTTGATTGTCCA-GGATT 719
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 661 ATTTTTTGGACTGCGGATGGGTACCACTCAGGCTGTTACAATCTTGATTG-CCAAGGATT 719
Query 720 TGTTCCTGTCAGCCAAAACTTTGCCCTAGGTGCAGCCGTTAGTAATGTTTCCACCTT-GA 778
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 720 TGTTCCTGTCAGCCAAAAATTTGCCCTTGGTGCAGCCGTTAGCAATGTTTCCACCTTCGA 779
Query 779 ATGGTCAACAATACCACATTCCCACAACTATATGGAAGGATCCACATACAGGGAATTGGT 838
||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 780 -TGGTCAACAATACCATATTTCCACAACTATATGGAAGGATCCAAATTCAGGGAATTGGT 838
Query 839 GGTTAAAATTTAATGACCATGAATTTGTCGGATATTGGCCTTCCATATTGTTCAACCATC 898
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGTTAAAATTTGGTGA---TGAATTTGTCGGATATTGGCCTTCCATATTGTTCAACCATC 895
Query 899 TAAAAGATGGTGCGACCGAAATTCAGTGGGGAGGTGAAATAATAAACTTTAAAGATGGTT 958
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 896 TAAAAGATGGTGCGACAGAAATTCAGTGGGGAGGTGAAATAATAAATTTTAAAGATGGTG 955
Query 959 CACTTCACACGACGACGCGAATGGGGAGTGGACATTTTGCAGAGGAGGGATATCAAAAAG 1018
|||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 956 CACTACACACCACGACGAGAATGGGGAGTGGACATTTTGCAGAGTCTGGATATCAAAAAG 1015
Query 1019 CTAGTTATTTCAAGAATCTTGAGATAATTGATGAACATGATATTCATAATAAACCTAAAG 1078
| |||||||||||| || |||||||||||||||||| ||||||||||| || |||||||
Sbjct 1016 CAAGTTATTTCAAGGATGTTGAGATAATTGATGAACGTGATATTCATAGTAGTCCTAAAG 1075
Query 1079 AAGGTTATTCTTATATGACGCAAGAGAGTTGTTATAACATCAGGTCTGGCTATGCTAA-G 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1076 AAGGTTATTCTTATATGACGCAAGAGAGTTGTTATAACATCAGGTCTGGCTATGCTAAAG 1135
Query 1138 ATATGGGGAGTTTATTTTTATTATGGTGGCCCAGGTCGAAATCAGAATTGTAAATAA 1194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1136 -TATGGGGAGTTTATTTTTATTATGGTGGCCCAGGTCGAAATCTGAATTGTAAATAA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5