BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906617

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17850.1 | Symbols:  | Rhodanese/Cell cycle control phosphat...   649    0.0  


> AT2G17850.1 | Symbols:  | Rhodanese/Cell cycle control phosphatase 
superfamily protein | chr2:7760005-7760822 REVERSE LENGTH=506
Length=506

 Score =  649 bits (351),  Expect = 0.0
 Identities = 438/479 (91%), Gaps = 10/479 (2%)
 Strand=Plus/Plus

Query  1    ATGGATTCTTTACACGTTATAAAATCctttcttcttcttcttcttATCATTGTTTCTATT  60
            |||||||||||||||||| | | ||||  | ||||||||| | || ||||||||| || |
Sbjct  36   ATGGATTCTTTACACGTTCTTAGATCC--T-TTCTTCTTC-T-TT-TCATTGTTTTTAAT  89

Query  61   GATCTTCCTCGCACGACTTCATCAAACTCAGAACCAAAAGTTATTACTATCGATGTAAGT  120
             ||||||||||||| ||| ||||||  |||||||||||||| ||||| ||||||||||  
Sbjct  90   CATCTTCCTCGCACAACTACATCAATGTCAGAACCAAAAGTCATTACCATCGATGTAAAC  149

Query  121  CAAGCCCAGAAACTTCTTGATTCTGGCTACACGTTTCTTGATGTCAGAACTGTTGAAGAA  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  150  CAAGCTCAGAAACTTCTTGATTCTGGCTACACGTTTCTTGATGTCAGAACTGTTGAAGAG  209

Query  181  TTCGAGGAAGGCCATGTTGATTCAGAGAAA-GTCTTCAATGTTCCTTACTGGTTATATTC  239
            ||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct  210  TTCAAGAAAGGCCATGTTGATTCAGA-AAATGTCTTCAATGTTCCTTACTGGTTATATAC  268

Query  240  TCCACAGGGGCAAGAGATTAACCCTAATTTCTTGAAACATGTTTCATCTCTCTGTAACCA  299
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  TCCACAAGGTCAAGAGATTAACCCTAATTTCTTGAAACATGTTTCATCTCTCTGTAACCA  328

Query  300  AACCAATCATCTCGTCGTGGGATGTAAATCGGGAGTTAGATCATTATATGCTACCAAAGT  359
            |||| |||||||| || ||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct  329  AACCGATCATCTCATCCTGGGATGTAAATCTGGAGTTAGATCATTACATGCTACCAAATT  388

Query  360  TCTTGTTTCTTCTGGCTTCAAGAATGTTAA-AAACATGGACGGTGGTTACATTGCTTGGG  418
            |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct  389  TCTTGTTTCTTCCGGCTTCAAGACTGT-AAGAAACATGGACGGTGGTTACATTGCTTGGG  447

Query  419  TCGACAAGAGATTTCCAGTTAAAGTGGAACACAAGGAACTCAAGTATGATGAGCTTTGA  477
            || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  448  TCAACAAGAGATTCCCAGTTAAAGTGGAACACAAGGAACTCAAGTATGATGAGCTTTGA  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5