BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906621
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17890.1 | Symbols: CPK16 | calcium-dependent protein kinase... 2732 0.0
AT4G36070.2 | Symbols: CPK18 | calcium-dependent protein kinase... 1214 0.0
> AT2G17890.1 | Symbols: CPK16 | calcium-dependent protein kinase
16 | chr2:7769885-7772627 REVERSE LENGTH=1716
Length=1716
Score = 2732 bits (1479), Expect = 0.0
Identities = 1618/1687 (96%), Gaps = 2/1687 (0%)
Strand=Plus/Plus
Query 16 TCCTCCGGCCACAACCGCAGTAGCCGGAAT-CCTAACCACCATCCTCCTCTCACGGTGGC 74
|||||||||||||||||||||||||||||| || | ||| ||||||||||||||||| |
Sbjct 31 TCCTCCGGCCACAACCGCAGTAGCCGGAATCCCCACCCA-CATCCTCCTCTCACGGTTGT 89
Query 75 TAAAACCAGACCACCGCAATCTCCATGTTCTTTCATGGCGGTTACGATCCAAAAGGATCA 134
|||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 90 TAAATCCAGACCACCGCGATCTCCATGTTCCTTCATGGCCGTTACGATCCAAAAGGATCA 149
Query 135 TAGGACGCAACCGCGACGCAATGCGGCGGCTAAGAAAACGCCGACGCGGCAAACGCCACC 194
||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 150 TAGAACGCAACCGCGACGCAATGCAACGGCTAAGAAAACGCCGACGCGGCATACGCCACC 209
Query 195 GCACGGGAGAGGGAGAGAGAAAGTTATTAGCAATAACGGTAGGAGACATGGAGAAGCGAT 254
|||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 210 GCACGGGAAAGTGAGAGAGAAAGTTATAAGCAATAACGGTAGGAGACATGGAGAAACGAT 269
Query 255 CCCCTACGGTAAGCGTATCGATTTCGGGTACGCTAAAGATTTTGATCACCGTTACACCAT 314
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 270 CCCCTACGGTAAGCGTGTAGATTTTGGGTACGCTAAAGATTTTGATCACCGTTACACCAT 329
Query 315 TGGAAATTTGCTTGGACATGGTCAATTTGGTTATACATATGTCGCTACCGATaaaaaaaC 374
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TGGAAAATTGCTTGGACATGGTCAATTTGGTTATACATATGTCGCTACCGATAAAAAAAC 389
Query 375 CGATGATCGTGTCGCGGTCAAGAAGATCGATAAGGCCAAGATGACAATTCCGATAGCTGT 434
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CGGTGATCGTGTCGCCGTCAAGAAGATCGATAAGGCCAAGATGACAATTCCGATAGCTGT 449
Query 435 GGAAGATGTAAAGAGAGAGGTGAAGATACTACAAGCTTTGACTGGTCATGAAAATGTGGT 494
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 450 GGAAGATGTAAAGAGAGAGGTGAAGATATTACAAGCTTTAACTGGTCATGAAAATGTGGT 509
Query 495 TCGGTTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATGGAGTTATGCGA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TCGGTTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATGGAGTTATGCGA 569
Query 555 GGGTGGTGAATTACTTGATCGGATATTAGCCAGGAAAGATAGCCGTTATAGCGAGAGAGA 614
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 570 GGGTGGTGAATTACTTGATCGTATTTTAGCCAGGAAGGATAGCCGTTATAGCGAGAGAGA 629
Query 615 CGCGGCCGTGGTAGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTGCGCGGTTT 674
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 630 CGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTT 689
Query 675 GGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAAGAAGATTCGCC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAAGAAGATTCGCC 749
Query 735 TCTAAAAGCTACAGATTTCGGTTTATCAGACTTCATAAAGCCAGGCAAAAAGTTTCATGA 794
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 750 TCTAAAAGCTACTGATTTCGGTTTATCTGACTTCATAAAGCCAGGCAAAAAGTTTCATGA 809
Query 795 CATTGTTGGCAGTGCATACTATGTAGCACCTGAAGTGTTGAAACGCAGGTCGGGACCCGA 854
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 810 TATTGTTGGGAGTGCATACTATGTAGCACCTGAAGTGTTAAAACGTAGGTCGGGACCTGA 869
Query 855 ATCAGATGTGTGGAGTATCGGTGTAATCAGTTACATTCTTCTCTGCGGGAGACGACCATT 914
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ATCAGATGTGTGGAGTATTGGTGTAATCAGTTACATTCTTCTCTGCGGGAGACGACCATT 929
Query 915 CTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTCTTGAAGAACAAACCTGATTTCAG 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 930 CTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTTTTGAAGAACAAACCTGATTTCAG 989
Query 975 AAGAAAACCGTGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTTAAGAAGTTGTTAGT 1034
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 990 AAGAAAACCGTGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTCAAGAAGTTGTTAGT 1049
Query 1035 AAAAGATCCGAGAGCGCGATTAACTGCTGCGCAAGCACTATCACATCCATGGGTTAGAGA 1094
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1050 AAAAGACCCGAGAGCGCGATTAACAGCTGCACAAGCACTATCACATCCATGGGTTAGAGA 1109
Query 1095 AGGAGGAGATGCATCTGAGATTCCTATAGACATATCTGTCCTTAATAACATGCGTCAGTT 1154
|||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||
Sbjct 1110 AGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACAACATGCGTCAGTT 1169
Query 1155 TGTGAAATTTAGCCGCCTCAAGCAATTCGCTCTAAGGGCTCTTGCAACGACGCTTGATGA 1214
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1170 TGTGAAATTTAGCCGCCTTAAGCAATTCGCTTTAAGGGCTCTTGCAACGACACTTGATGA 1229
Query 1215 AGAAGAGTTGGCTGATCTTAGAGACCAGTTCGATGCGATTGATGTTGACAAGAATGGCGC 1274
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct 1230 GGAAGAGTTGGCTGATCTTCGAGACCAGTTTGATGCGATTGATGTTGACAAGAATGGTGT 1289
Query 1275 CATTAGCCTTGAAGAGATGAGGCAGGCTCTGGCGAAAGATCATCCTTGGAAGCTTAAGGA 1334
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1290 CATTAGCCTTGAAGAGATGAGGCAGGCTCTAGCGAAAGATCATCCTTGGAAGCTTAAGGA 1349
Query 1335 TGCACGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAGATGGATTTGTGGACTT 1394
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1350 TGCAAGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAGATGGATTCGTGGACTT 1409
Query 1395 CGGGGAGTTTGTAGCGGCTGCACTACACGTAAATCAATTAGAGGAACACGATTCCGAAAA 1454
|| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1410 TGGCGAGTTTGTCGCCGCTGCGCTACACGTAAACCAATTAGAGGAACACGATTCCGAGAA 1469
Query 1455 GTGGCAGCAGAGATCAAGAGCAGCATTTGAAAAATTCGACATAGATGGAGATGGATTTAT 1514
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 GTGGCAACAGAGATCAAGAGCAGCATTTGAAAAATTCGACATAGATGGAGATGGATTTAT 1529
Query 1515 AACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCCATTGAGCCACTTCTTGA 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 AACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCCATTGAGCCACTTCTTGA 1589
Query 1575 AGAAGCAGATATTGACAATGATGGTAAAATCAGTCTCCAAGAGTTTCGTAGACTTTTGAG 1634
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 AGAAGCAGACATTGACAATGATGGTAAAATCAGTCTCCAAGAGTTTCGTAGACTTTTGAG 1649
Query 1635 AACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCTGGTTACCTTATTTCTCGCAA 1694
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1650 AACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCTGGTTATCTTATTTCTCGCAA 1709
Query 1695 GGTCTAA 1701
|||||||
Sbjct 1710 GGTCTAA 1716
> AT4G36070.2 | Symbols: CPK18 | calcium-dependent protein kinase
18 | chr4:17056723-17059627 REVERSE LENGTH=1738
Length=1738
Score = 1214 bits (657), Expect = 0.0
Identities = 1186/1442 (82%), Gaps = 34/1442 (2%)
Strand=Plus/Plus
Query 252 GATCCCCTACGGTAAGCGTATCGATTTCGGGTACGCTAAAGATTTTGATCACCGTTACAC 311
|||||| |||||||| || |||||||| ||||||||||| ||||| ||| |||| |||||
Sbjct 188 GATCCCGTACGGTAAACGCATCGATTTTGGGTACGCTAAGGATTTCGATAACCGATACAC 247
Query 312 CATT-GGAAATTTGCTTGGACATGGTCAATTTGG-TTATACATATGTCGCTACCGATaa- 368
|||| ||||| ||||| |||||||| || ||||| || ||| || ||||| ||||||||
Sbjct 248 CATTGGGAAA-TTGCTCGGACATGGCCAGTTTGGCTT-TACCTACGTCGCCACCGATAAC 305
Query 369 aaaaaCCGATGATCGTGTCGCGGTCAAGAAG-ATCGATAAGGCCAAGATGA--CAATTCC 425
|| || | |||| || || |||||| || ||||| ||||||||||||| ||| ||
Sbjct 306 AACAA-TGGCAATCGCGTTGCAGTCAAG-AGAATCGACAAGGCCAAGATGACTCAA--CC 361
Query 426 GATAGCTGTGGAAGATGTAAAGAGAGAGGTGAAGATACTACAAGCTTTGA-CTGGTCATG 484
||| | ||||||||||| ||| ||||||| ||||||||||||||||| | ||| ||||
Sbjct 362 GATTGAAGTGGAAGATGTGAAGCGAGAGGTTAAGATACTACAAGCTTT-AGGTGGGCATG 420
Query 485 AAAATGTGGTTCGG-TTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATG 543
| ||||||| | || ||| | ||||| || |||||||||| || | |||| || || |||
Sbjct 421 AGAATGTGG-TAGGCTTTCACAATGCATTTGAGGACAAGACCTATATTTACATTGTCATG 479
Query 544 GAGTTATGCGAGGGTGGTGAATTACTTGATCGGATATTAGCCAGGAAAGATAGCCGTTAT 603
|||||||| || ||||||||||| || ||||| ||| |||| | |||||||||||||||
Sbjct 480 GAGTTATGTGACGGTGGTGAATTGCTAGATCGAATACTAGCTAAGAAAGATAGCCGTTAC 539
Query 604 AGCGAGAGAGACGCGGCCGTGGTAGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCAT 663
| ||||| ||| || || || || ||||||||||||||||||||||| ||||| ||||||
Sbjct 540 ACCGAGAAAGATGCAGCGGTTGTGGTGAGACAAATGCTGAAAGTTGCAGCTGAATGTCAT 599
Query 664 TTGCGCGGTTTGGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAA 723
|| || ||| | |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 600 TTACGAGGTCTAGTTCACCGCGACATGAAGCCAGAGAATTTTCTGTTCAAATCAACCGAA 659
Query 724 GAAGATTCGCCTCTAAAAGCTACAGATTTCGGTTTATCAGACTTCATAAAGCCAGGCAA- 782
|||| ||| ||||||| ||||||||||| ||| | || ||||||||||||||||| |
Sbjct 660 GAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGG-AGT 718
Query 783 -AAAGTTTCATGACATTGTTGGCAGTGCATACTATGTAGCACCTGAAGTGTTGAAACGCA 841
||| ||||| || || || || || |||||||| || |||||||||||||||||||| |
Sbjct 719 GAAA-TTTCAGGATATAGTAGGAAGCGCATACTACGTTGCACCTGAAGTGTTGAAACGTA 777
Query 842 GGTCGGGACCCGAATCAGATGTGTGGAGTATCGGTGTAATCAGTTACATTCTTCTCTGCG 901
|||| ||||| |||||||| || |||||||| ||||| |||| ||||||||| |||||||
Sbjct 778 GGTCAGGACCTGAATCAGACGTTTGGAGTATTGGTGTCATCACTTACATTCTGCTCTGCG 837
Query 902 GGAGACGACCATTCTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTCTTGAAGAACA 961
||||| |||| ||||||||||||||| ||||||| || ||||| |||||| ||| ||| |
Sbjct 838 GGAGAAGACCCTTCTGGGATAAGACTCAAGACGGAATATTCAATGAGGTCATGAGGAAAA 897
Query 962 AACCTGATTTCAGAAGAAAACCG-TGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTT 1020
|||||||||||||| ||| || |||||||||||||||||| | ||||||||||| ||
Sbjct 898 AACCTGATTTCAGA-GAAGTCCCATGGCCAACCATTAGCAACGGTGCCAAAGATTTCGTG 956
Query 1021 AAGAAGTTGTTAGTAAAAGATCCGAGAGCGCGATTAACTGCTGCGCAAGCACTATCACAT 1080
|||||||||||||| || || || | || || ||||| || || ||||| |||||||||
Sbjct 957 AAGAAGTTGTTAGTTAAGGAGCCTCGGGCACGGTTAACAGCAGCTCAAGCGCTATCACAT 1016
Query 1081 CCATGGGTTAGAGAAGGAGGAGATGCATCTGAGATTCCTATAGACATATCTGTCCTTAAT 1140
||||||| | ||||||||| || || || ||| |||| |||||||||||||| |||||
Sbjct 1017 TCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAAC 1076
Query 1141 AACATGCGTCAGTTTGTGAAATTTAGCCGCCTCAAGCA-ATTCGCTCTAAGGGCTCTTGC 1199
|| |||||||||||||||||||| ||||| || ||||| ||| || || |||||||| ||
Sbjct 1077 AATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAAGCAGATT-GCACTTAGGGCTCTGGC 1135
Query 1200 -AACGACGCTTGATGAAGAAGAGTTGGCTGATCTTAGAGACCAGTTCGATGCGATTGATG 1258
|| || || |||| || ||| ||| |||||| ||||||||||| |||||||||||
Sbjct 1136 GAAA-ACAATTAATGAGGATGAGCTGGATGATCTCAGAGACCAGTTTGATGCGATTGACA 1194
Query 1259 TTGACAAGAATGGCGCCATTAGCCTTGAAGAGATGAGGCAGGCTCTGGCGAAAGATCATC 1318
|||||||||| || | || |||||||| || |||||||||||||| ||||||||| ||
Sbjct 1195 TTGACAAGAACGGTTCTATAAGCCTTGAGGAAATGAGGCAGGCTCTTGCGAAAGATGTTC 1254
Query 1319 CTTGGAAGCTTAAGGATGCACGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAG 1378
||||||| || || |||||| ||||||| |||||||| ||||||| |||||||||||| |
Sbjct 1255 CTTGGAAACTCAAAGATGCAAGAGTTGCAGAGATTCTCCAAGCGAATGATAGCAACACTG 1314
Query 1379 ATGGATTTG-TGGACTTCGGGGAGTTTGTAGCGGCTGCACTACACGTAAATCAATTAGAG 1437
|||| |||| |||| ||| |||||||| | |||||| | ||||| || ||||| |||
Sbjct 1315 ATGG-TTTGGTGGATTTCACTGAGTTTGTGGTGGCTGCTTTGCACGTGAACCAATTGGAG 1373
Query 1438 GAACACGATTCCGAAAAGTGGCAGCAGAGATCAAGAGCAGCATTTGAAAAATTCGACATA 1497
|| || || || || |||||||| ||||| ||||||||||||||||| || || ||||||
Sbjct 1374 GAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAGCAGCATTTGACAAGTTTGACATA 1433
Query 1498 GATGGAGATGGATTTATAACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCC 1557
|| |||||||| |||||||| | || |||||| || |||| || || || ||||| |||
Sbjct 1434 GACGGAGATGGGTTTATAACTCCCGAAGAACTTAGATTGCAAACGGGTTTAAAAGGCTCC 1493
Query 1558 ATTGAGCCACTTCTTGAAGAAGCAGATATTGAC-AATGATGGTAAAATCAGTC-TCCAA- 1614
|| || |||||||||||||| || || | || || ||||| | |||||| | || ||
Sbjct 1494 ATCGAACCACTTCTTGAAGAGGCCGACGTAGATGAA-GATGGGAGAATCAG-CATC-AAT 1550
Query 1615 GAGTTTCGTAGACTTTTGAGAACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCT 1674
|||||||| ||||||||||||| |||||| |||| |||| |||||||| ||||||||||
Sbjct 1551 GAGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAAAAAATGTTAAAAGCCCTCCT 1610
Query 1675 GG 1676
||
Sbjct 1611 GG 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5