BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906633

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18000.2 | Symbols: TAF14 | TBP-associated factor 14 | chr2:...   941    0.0  


> AT2G18000.2 | Symbols: TAF14 | TBP-associated factor 14 | chr2:7829035-7830580 
FORWARD LENGTH=807
Length=807

 Score =  941 bits (509),  Expect = 0.0
 Identities = 565/593 (95%), Gaps = 0/593 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGTCTGATATCGAGATTTTTTCTGAAGCTGATGCGTCTATGCAGAAGCTACGCATT  60
            |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct  1    ATGGAGTCGGATATCGAGATTTTGTCTGAAGCTGATGCGTCTATGCGGAAGCTACGCATT  60

Query  61   TTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGGATTAAAGATGTCGAAGTT  120
            ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct  61   TTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGAATCAAAGATGTTGAAGTT  120

Query  121  TATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGAATAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGAATAT  180

Query  181  CGAACACATAAGTGGACTGTCTATGTACGTGGAGCTACGAATGAGGATCTTGGTGTGGTT  240
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  181  CGAACACATAAGTGGACTGTTTATGTACGTGGAGCTACGAATGAGGATCTTGGTGTGGTT  240

Query  241  ATCAAGCGGGTTATTTTCCATTTGCATCCAAGTTTTAAGAACCCAACTAGAGTTGTTGAT  300
            |||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct  241  ATCAAGCGGGTTATCTTCCATTTGCATCCAAGTTTTAATAATCCAACTAGAGTGGTTGAT  300

Query  301  TCTCCTCCCTTTGCATTGTCTGAGTGTGGTTGGGGAGAATTCAAAATCGACATAACTGTT  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  301  GCTCCTCCCTTTGCATTGTCTGAGTGTGGTTGGGGAGAATTCAAAATCGACATAACCGTT  360

Query  361  ATCCTCCATACCGATGTCTGTGAAAAGAAGTTGGAGTTGTCTCACGTCTTAAAGCTGAAC  420
             || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTCTTCCATACCGATGTCTGTGAAAAGAAGTTGGAGTTGTCTCACGTCTTAAAGCTGAAC  420

Query  421  CCGGAGAATGAATATGGTCCTATTCCTAAGTCTATTAAGATACCCGTTGTCGCTGAGTCT  480
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CCGGAGAATGCATATGGTCCTATTCCTAAGTCTATTAAGATACCCGTTGTCGCTGAGTCT  480

Query  481  TACAATGAAATTGTCTTCCCTGACCCTTTTGAGAGTTTCCTTGCCCGTGTTCAGAATCAC  540
            ||||||||| ||||||| || |||||||||||||||||  | ||||||||||| ||||||
Sbjct  481  TACAATGAAGTTGTCTTTCCAGACCCTTTTGAGAGTTTTGTCGCCCGTGTTCATAATCAC  540

Query  541  CCGGCTGTACACATCTCTAACCTTCCAGATGGTTTCAACCTGCCTCCTCCAGG  593
            |||||| |||| ||||||||| | ||||||||||| |||||||||||||||||
Sbjct  541  CCGGCTATACAGATCTCTAACATCCCAGATGGTTTGAACCTGCCTCCTCCAGG  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5