BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906639
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family | ... 1303 0.0
AT4G36130.1 | Symbols: | Ribosomal protein L2 family | chr4:17... 974 0.0
AT4G14250.1 | Symbols: | structural constituent of ribosome | ... 86.1 5e-16
> AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family
| chr2:7837102-7838304 FORWARD LENGTH=970
Length=970
Score = 1303 bits (705), Expect = 0.0
Identities = 753/777 (97%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 109
Query 61 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGCGAAATGGTTAC 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 110 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTAC 169
Query 121 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGT 229
Query 181 GTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAGAAGGAGCTCTTCGTCGCCGCTGAA 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 230 GTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAA 289
Query 241 GGTATGTACACCGGCCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTCGGAAAT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 290 GGTATGTACACCGGTCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAAT 349
Query 301 GTTCTTCCTCTTAGATCTATCCCTGAAGGAGCTGTTGTGTGTAACGTTGAGCACCATGTC 360
||||| |||||||||||||| ||||||||||||||||| || ||||| ||||| || |||
Sbjct 350 GTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCATCACGTC 409
Query 361 GGTGATCGTGGTGTTCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATTGCTCACAAC 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 410 GGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAAC 469
Query 421 CCTGACAACGACACTACTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCGAGT 480
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 CCTGACAGCGACACTACTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGT 529
Query 481 GGATGCAGAGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTC 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTC 589
Query 541 AAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGAAACTCATGGCCTAAGGTTCGT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 590 AAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGT 649
Query 601 GGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACATTGGT 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACATTGGT 709
Query 661 CACGCCAGTACGGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGGCTTATTGCTGCA 720
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 710 CACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGTCTTATTGCTGCA 769
Query 721 AGGAGGACTGGACGTCTCAGAGGTCAAGCTGCTGCTTCAGCCGCCAAGGCAGACTAG 777
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 770 AGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTTCAGCTGCCAAGGCAGACTAG 826
> AT4G36130.1 | Symbols: | Ribosomal protein L2 family | chr4:17097565-17098879
FORWARD LENGTH=1048
Length=1048
Score = 974 bits (527), Expect = 0.0
Identities = 699/782 (89%), Gaps = 12/782 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 60
||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 49 ATGGGTCGTGTTATCAGAGCACAACGTAAGGGAGCTGGTTCCGTCTTCAAATCCCACACT 108
Query 61 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGCGAAATGGTTAC 120
|||||||| ||||||||||| || ||| | || ||||||||||| ||| ||||||||||
Sbjct 109 CACCACCGTAAAGGTCCGGCCAAATTCAGGAGTCTCGATTTCGGGGAGAGAAATGGTTAT 168
Query 121 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTT-GCTCG 179
|| || || || |||||||||||||| |||||||| || ||||||||||| || |||||
Sbjct 169 CTGAAAGGTGTTGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTCC-ATTGGCTCG 227
Query 180 CGTCA-CTTTCCGTCATCCTTTCCGTTTCAAGAAACAGAAGGAGCTCTTCGTCGCCGCTG 238
|| | ||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||
Sbjct 228 TGT-AGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCGTTGCTGCTG 286
Query 239 AAGGTATGTACACCGGCCAG-TTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTCGGA 297
|||||||||| ||||| ||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 287 AAGGTATGTATACCGGTCAGTTTCTT-TACTGTGGGAAGAAAGCTACTCTCGTCGTCGGA 345
Query 298 AATGTTCTTCCTCTTAGATCTATCCCTGAAGGAGCTGTTGTGTGTAACGTTGAGCACCAT 357
|||||||||||||| |||||||| ||||||||||||||| | ||||||||||| || |||
Sbjct 346 AATGTTCTTCCTCTCAGATCTATTCCTGAAGGAGCTGTTATTTGTAACGTTGAACATCAT 405
Query 358 GTCGGTGATCGTGGTGTTCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATTGCTCAC 417
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 406 GTTGGTGATCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCAC 465
Query 418 AACCCTGACAACGACACTA-CTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCC 476
|| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 466 AATCCTGATAACGACACTAGC-AGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTGCC 524
Query 477 GAGTGGATGCAGAGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGAT 536
||||||||||| || |||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 525 AAGTGGATGCAGGGCCATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGCCGAT 584
Query 537 GCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGAAACT-CATGGCCTAAGG 595
||||||||| || ||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 585 GCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCTAAGG 643
Query 596 TTCGTGGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA 655
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || |
Sbjct 644 TTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACATA 703
Query 656 TTGGTCACGCCAGTACGGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGGCTTATTG 715
|||||||||| ||||| ||| | ||||||||||| || ||| | |||||||| |||||||
Sbjct 704 TTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCAGGAAAAAAGGTTGGTCTTATTG 763
Query 716 CTGCAAGGAGGACTGGACGTCTCAGAGGTCAAGCTGCTGCT-TCAGCCGCCAAGGCAGAC 774
|||||||||||||||| |||||||||||||||||||||||| | || |||||||||||
Sbjct 764 CTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTT-GCTTCCAAGGCAGAC 822
Query 775 TA 776
||
Sbjct 823 TA 824
> AT4G14250.1 | Symbols: | structural constituent of ribosome
| chr4:8208748-8213237 REVERSE LENGTH=2703
Length=2703
Score = 86.1 bits (46), Expect = 5e-16
Identities = 63/70 (90%), Gaps = 5/70 (7%)
Strand=Plus/Plus
Query 574 AAGAGAAAC-TCATGGCCTAAGGTTCGTGGTGTGGCTATGA--A-CCCAGTGGAGCATCC 629
||||||||| | ||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 1237 AAGAGAAACAT-GTGGGCTAAGGTTCGTGGTGTGGCTATGATGAACCCAGTGGAGCATCC 1295
Query 630 TCATGGAGGA 639
||||||||||
Sbjct 1296 TCATGGAGGA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5