BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906644
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18060.1 | Symbols: VND1, ANAC037 | vascular related NAC-dom... 1640 0.0
AT4G36160.1 | Symbols: ANAC076, VND2, NAC076 | NAC domain conta... 702 0.0
> AT2G18060.1 | Symbols: VND1, ANAC037 | vascular related NAC-domain
protein 1 | chr2:7848399-7850303 REVERSE LENGTH=1098
Length=1098
Score = 1640 bits (888), Expect = 0.0
Identities = 1032/1102 (94%), Gaps = 8/1102 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCAATGGAATCTTGTAGCGTTCCTCCTGGATTCAGGTTCCATCCGACTGACGAA 60
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1 ATGGAGCCAATGGAATCTTGTAGCGTTCCTCCAGGATTTAGGTTCCATCCGACGGACGAA 60
Query 61 GAGCTTGTCGGTTACTATCTAAGGAAGAAAATCGCATCGCAAAAGATTGATCTTGATGTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 GAGCTTGTCGGGTACTATCTAAGGAAGAAAATCGCATCGCAAAAGATTGATCTCGACGTC 120
Query 121 ATCAGAGACATTGATCTCTACAGAATCGAACCATGGGATCTACAAGAGCAATGTCGAATC 180
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 121 ATCAGAGACATCGATCTCTACAGAATAGAACCATGGGATCTACAAGAACAATGTCGAATC 180
Query 181 GGATATGAAGAGCAAAATGAATGGTAtttttttAGTCACAAGGACAAAAAATATCCAACG 240
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGTTATGAGGAACAAAATGAATGGTATTTTTTTAGTCACAAGGACAAGAAATATCCAACG 240
Query 241 GGGACAAGAACTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGACAAGAACTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAA 300
Query 301 GCTGTTTACGACAAAACAAAACTAATTGGAATGAGGAAAACACTTGTGTAT-TACAAAGG 359
||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 301 GCTGTTTACGACAAAACAAAACTAATTGGTATGAGGAAAACACTTGTGT-TCTACAAAGG 359
Query 360 ACGTGCTCCTAATGGCCAA-AAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAG 418
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGTGCACCTAATGGC-AAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAG 418
Query 419 ATGAGAATGCACCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAGAAAAGAG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 ATGAGAATGCACCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAAAAAAGAG 478
Query 479 CTACCGGGCAAGCCAAGAACACGGAAACTTGGACCTCAAGTTACTTCTATGATGAAGTCG 538
|||| |||||||||||||||||||||||||||| |||||||||||| || |||||||| |
Sbjct 479 CTACAGGGCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGATGAAGTTG 538
Query 539 CATCGAATGGCGTTAACTCGTTTACAGACCCGATTGATTACATATCTAAGCAGCAACATA 598
|| ||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 539 CACCGAATGGAGTTAACTCGGTTATGGACCCCATTGATTACATATCTAAGCAGCAACATA 598
Query 599 A-ACTTTTTGGAAAAGGTTTGATGTGTAAGCAAGAACTAGAAGGAATGGTTGACGGTCTA 657
| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 599 ACA-TTTTTGGGAAAGGTTTGATGTGTAAGCAAGAACTAGAAGGAATGGTTGATGGTATA 657
Query 658 AACTATATGCAATCAAATCAATTCATTCAGCTCCCGCAACTCCAAAGTCCTTCTCTCCCG 717
|||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 658 AACTATATACAATCGAATCAATTCATTCAGCTCCCACAACTCCAAAGCCCTTCTCTCCCG 717
Query 718 CTGATGAAAAGGCCTTCGAGCTCGATGTCCATAACATCAATGGACAACCATTGTAACTAC 777
||||||||||| ||||| |||||||||||||||||||||||||| ||| ||| |||||
Sbjct 718 CTGATGAAAAGACCTTCAAGCTCGATGTCCATAACATCAATGGATAACAATTACAACTAT 777
Query 778 AAAAC-CCCATCAGAGGATGAAGAAAGCTTCGAGTCATTAATAAGCCGAGAGAATAAAAG 836
||| | ||||| || |||||||||||||||||||||||| ||||| ||||| ||| |||
Sbjct 778 AAA-CTCCCATTAGCGGATGAAGAAAGCTTCGAGTCATTCATAAGAGGAGAGGATAGAAG 836
Query 837 AAAGAAGAAAAAGCAAGTAATGATGACGGGAGATTGGAGAGAGTTAGATAAGTTTGTTGC 896
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 837 GAAGAAGAAAAAGCAAGTAATGATGACGGGAAATTGGAGAGAGTTAGACAAGTTTGTTGC 896
Query 897 TTCACAACTTATGAGCCAAGAAGATAATGGAACTTCAGGTTTCGCTGGTCATCATATAGC 956
|||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 897 TTCACAACTTATGAGCCAAGAAGACAATGGAACTTCAAGTTTCGCAGGTCATCATATAGT 956
Query 957 TAATGAAGATAAAAACAACAATGATGTGGAGATTGATTCGTCGATGTTTTTGAGCGAGAG 1016
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 957 TAATGAAGATAAAAACAACAATGATGTGGAGATGGATTCGTCAATGTTTTTGAGCGAAAG 1016
Query 1017 AGAAGAAGAGAACAGGTTCATCAGTGAGTTCTTGAGTACAAACTCGGATTATGATATTGG 1076
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 AGAAGAAGAAAACAGGTTCGTCAGTGAATTCTTGAGTACAAACTCGGATTATGATATTGG 1076
Query 1077 GATTTGCGTATTTGATAATTGA 1098
||||||||||||||||||||||
Sbjct 1077 GATTTGCGTATTTGATAATTGA 1098
> AT4G36160.1 | Symbols: ANAC076, VND2, NAC076 | NAC domain containing
protein 76 | chr4:17110747-17114141 REVERSE LENGTH=1465
Length=1465
Score = 702 bits (380), Expect = 0.0
Identities = 783/970 (81%), Gaps = 58/970 (6%)
Strand=Plus/Plus
Query 14 AATCTTGTAGCGTTCCTCCTGGATTCAGGTTCCATCCGACTGACGAAGAGCTTGTCGGTT 73
|||| ||||| |||||||| |||||||| |||||||| || || |||||||| || ||||
Sbjct 218 AATCATGTAGTGTTCCTCCGGGATTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTT 277
Query 74 ACTATCTAAGGAAGAAAA-TCGCATCGCAAAAGATTGATCTTGATGTCATCAGAGACATT 132
||||| ||||||| |||| | |||||||||||||| |||||||||||||| ||||| |||
Sbjct 278 ACTATTTAAGGAA-AAAAGTTGCATCGCAAAAGATCGATCTTGATGTCATAAGAGATATT 336
Query 133 GATCTCTACAGAATCGAACCATGGGATCTACAAGAGCAA-TGTCGAATCGGATATGAAGA 191
||||||||||||||||||||||||||| |||||||| | || |||||||||||||| ||
Sbjct 337 GATCTCTACAGAATCGAACCATGGGATTTACAAGAG-AGCTGCCGAATCGGATATGAGGA 395
Query 192 GCA-AAATGAATGGTAtttttttAGTCACAAGGACAAAAAATATCCAACGGGGACAAGAA 250
| ||||||||||||||| || || ||||| || || ||||||||||| || |||||||
Sbjct 396 A-AGAAATGAATGGTATTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACAAGAA 454
Query 251 CTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAAGCTGTTTACG 310
| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 455 CAAACAGAGCGACCATGGCTGGGTTTTGGAAAGCCACGGGCCGAGACAAGGCTGTTTACG 514
Query 311 ACAAAACAAAACTAATTGGAATGAGGAAAACACTTGTGTAT-TACAAAGGACGTGCTCCT 369
|||| ||||||| ||||| ||||| ||||||||||||| | ||||||||| | || |||
Sbjct 515 ACAAGTCAAAACTGATTGGTATGAGAAAAACACTTGTGT-TCTACAAAGGAAGAGCCCCT 573
Query 370 AATGGCCAAAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCA 429
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 574 AATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCA 633
Query 430 CCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAGAAAAGAGC---T-ACCGG 485
|| || ||||||||||| ||||||||||||||||| |||||||||| ||| | |||||
Sbjct 634 CCTCCTCAGGAAGAAGGGTGGGTGGTTTGTAGAGCGTTCAAGAAAA-AGCCAATGACCGG 692
Query 486 GCAAGCCAAGAACACGGAAACTTGGACCTCAAGTTACTTCTATGATGAAGTCGCATCGAA 545
||||||||||||||| |||||||||| |||||||||||| || || ||| | | |||
Sbjct 693 GCAAGCCAAGAACACAGAAACTTGGAGCTCAAGTTACTTTTACGACGAATTA-C--CGAG 749
Query 546 TGGCGTTAA-CTC-GTTTACAGACCCGATTGATTACATATCTAAGCAGCAACATAAAC-T 602
||| || | ||| ||| || || || || | ||| ||||||||||| |||| |||| |
Sbjct 750 TGGAGT-ACGCTCAGTT-ACGGAGCCTCTTAACTACGTATCTAAGCAGAAACA-AAACGT 806
Query 603 TTTTGGAAAAGGTTTGATGTGT-AAGCAAGAACTAGAAGGAATG-GTTGA-CGGTCTAAA 659
||||| | ||| ||| |||| | |||||||||||||||||| | | | | |||| ||||
Sbjct 807 TTTTGCACAAGATTTAATGT-TCAAGCAAGAACTAGAAGGA-TCAGAT-ATCGGTTTAAA 863
Query 660 CTAT-ATGCAAT-CAAATCAATTCATTCAGCTCCCGCAACTCCAAAGTCCTTCTCTCCCG 717
|| | || || | | | |||||||||||| || ||||| || |||| ||||| |||||
Sbjct 864 CT-TCATCCACTGCGA-TCAATTCATTCAACTTCCGCAGCTTGAAAGCCCTTCACTCCCT 921
Query 718 CTGATGAAAAGGCCT-TCGAGCTCGATGTCCATAACATCAATGGACAACCATTGTAA--- 773
|| | ||||| || | ||||| || ||| || |||||| |||| || || ||
Sbjct 922 CTTACCAAAAGACCAGT-GAGCTTGACGTCAATTACATCATTGGAGAAGAATAAAAATAT 980
Query 774 CTACAAAACCCCATC-AG-AG--GATGAAGAAAGCTTCGA-GTCATTAATAAGCCGAGAG 828
|||||||| | || | || || || | |||||| | | | ||||||| | | |
Sbjct 981 CTACAAAAGAC-ATTTAATAGAAGAGGATGTGAGCTTCAATG-CGCTAATAAGTAGTG-G 1037
Query 829 AA-TAAAAGA-AAGAAGAAAAAGCAAGTA--A-TGATGACGG-GAGATTGGAGAG-AGTT 881
|| |||| || |||||||| ||| || | | |||||||| | |||||||||| | |
Sbjct 1038 AAATAAA-GATAAGAAGAAGAAGAAAACATCAGTGATGACGACG-GATTGGAGAGCACTC 1095
Query 882 AGATAAGTTTGTTGCTTCACAACTTATGAGCCAAGAAGATAATGGAACTTCAGGTTTCGC 941
||||| ||||||||||| ||||||||||||||||||||| ||| ||| ||||| |
Sbjct 1096 -GATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGAT---GGAGTTTCGGGTTTTGG 1151
Query 942 TGGTCATCAT 951
|||||||||
Sbjct 1152 AGGTCATCAT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5