BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906645

Length=888
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18070.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   187    1e-46
  AT1G70770.1 | Symbols:  | Protein of unknown function DUF2359, ...   185    5e-46


> AT2G18070.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: Protein of unknown function DUF2359, 
transmembrane (TAIR:AT1G23170.2); Has 27 Blast hits to 27 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 
0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr2:7852529-7853666 FORWARD LENGTH=471
Length=471

 Score =  187 bits (101),  Expect = 1e-46
 Identities = 138/156 (88%), Gaps = 2/156 (1%)
 Strand=Plus/Plus

Query  1    ATGGAACCGATCGAGTACAATGTTTTTGAGTCCTCTAAATGTAACTCCCACGACGACGAC  60
            ||||||||||||||||||||||| | |||| | ||||||||||||||||||| |||||||
Sbjct  1    ATGGAACCGATCGAGTACAATGTATGTGAGACTTCTAAATGTAACTCCCACGTCGACGAC  60

Query  61   CATGGATGGAAGAAAGTCGTGTCC-CGGAAGCGCAACCTGAAGCAAAAACCAGCGGATGA  119
            |||||||||||||||||||||||| || ||| |||  | ||||| ||||||||||||| |
Sbjct  61   CATGGATGGAAGAAAGTCGTGTCCTCG-AAGAGCATTCGGAAGCGAAAACCAGCGGATCA  119

Query  120  AGAGGCCAATGGAAACCAACCTACCGGCGAGAACGT  155
             | ||||| |||||||||||||||||| ||| ||||
Sbjct  120  GGCGGCCAGTGGAAACCAACCTACCGGTGAGGACGT  155


 Score = 93.5 bits (50),  Expect = 3e-18
 Identities = 60/64 (94%), Gaps = 3/64 (5%)
 Strand=Plus/Plus

Query  418  GGAATGGTACTACGTAGC-AGACCTAATGCTTTGGCTATTGTATTACCGACACTGAGGGG  476
            ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| 
Sbjct  346  GGAATGGTACTGCGTA-CAAGACCTAATGCTTTGGCTATTGTATTACCGACACTGAGGG-  403

Query  477  AGAA  480
            ||||
Sbjct  404  AGAA  407


> AT1G70770.1 | Symbols:  | Protein of unknown function DUF2359, 
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317

 Score =  185 bits (100),  Expect = 5e-46
 Identities = 159/187 (85%), Gaps = 5/187 (3%)
 Strand=Plus/Plus

Query  689   AAAGTTTCATACTAAAGAACGAAAAAGTCATCACTGAAGGAGGAGCCAATGCTTCTCTTT  748
             |||| ||||  |||||||||||  | ||||||||||| ||||||||||||||||||||||
Sbjct  1627  AAAGCTTCAGGCTAAAGAACGAGGAGGTCATCACTGAGGGAGGAGCCAATGCTTCTCTTT  1686

Query  749   ACAAAGAAGCTAACAAATATTGCAAAGTGATCTTGGGGAGACTCTCTCATGGAAGTGGCT  808
             ||||||||||| |||| | |||||||  ||||| |||||||||||| | |||||||||||
Sbjct  1687  ACAAAGAAGCTGACAAGTCTTGCAAAACGATCTCGGGGAGACTCTCCCGTGGAAGTGGCT  1746

Query  809   GCCTCAAAGCTAC--C-ATTACTGTT-GTGGTTCTAGCTACTGTAGGAACCACTGCTGCA  864
             |||||||||  ||  | |||||| || ||| |||||||| ||| |||| || ||||||||
Sbjct  1747  GCCTCAAAGGAACAGCCATTACT-TTAGTGTTTCTAGCTGCTGCAGGAGCCGCTGCTGCA  1805

Query  865   GTTGTTC  871
             | |||||
Sbjct  1806  GCTGTTC  1812



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43352068861


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5