BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906657

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF00...   409    1e-113


> AT5G36290.1 | Symbols:  | Uncharacterized protein family (UPF0016) 
| chr5:14302739-14305176 FORWARD LENGTH=1224
Length=1224

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 335/386 (87%), Gaps = 24/386 (6%)
 Strand=Plus/Plus

Query  1     CGTCGCTTATTCTCAAGATTTTGTACCCCAATATTTCTAGAGTCCTTCAACTTAACCTTT  60
             ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct  730   CGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAGTCCTTCATCTTAACCTTT  789

Query  61    CTAGCTGAATGGGGTGACCGTAGCAAGATCGCTACAATAG-ATT---G--T--C--G-A-  108
             |||||||||||||||||||||||| |||||||||||||||  ||   |  |  |  | | 
Sbjct  790   CTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTTTGGCGACTCACAAGAAC  849

Query  109   --TATAGGATTGTCCATCGGGGCAACTATTGGACAAACGCGTTGTGTACTTCACCAGCGG  166
                |||||| || |||| ||||||| ||||||||| ||  | |||||||||||| ||| |
Sbjct  850   GCCATAGGAGTGGCCATTGGGGCAAGTATTGGACACAC-TG-TGTGTACTTCACTAGCAG  907

Query  167   TTGTTGGAGGAAGCATGCTGGCTTTAAGGATCTCACAACGGACGGTTGCAACTGTTGGAG  226
             |||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||
Sbjct  908   TTGTTGGAGGAAGCATGCTGGCTTCAAGGATCTCGCAACGTACGGTCGCAACTGTTGGAG  967

Query  227   GCTTGCTCTTCTTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTACAGTCAATGC  286
             |||| |||||| |||||||||||||||||||||||||||||||||||||  ||| |||| 
Sbjct  968   GCTTACTCTTCCTCGGCTTTTCAGTCTCCTCCTATTTCTATCCTCCATTGTAGTAAATGT  1027

Query  287   GCTTCTTTCGAAAATGGGTGTTGGAGACATTTTCTAA-TAAAGTTTCAATTTTGtttttt  345
             |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||
Sbjct  1028  GCTTCTTTCGAAAATGGGTGTTAGAGACAATTTCTAAGTAAAGTTTCAATTTT-TTTTTT  1086

Query  346   --tttGTA-TTAAA-TTTGAT-TTTT  366
               ||| || || || |||||| ||||
Sbjct  1087  GATTT-TAATTTAAGTTTGATATTTT  1111



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17191570158


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5