BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906687
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18380.1 | Symbols: GATA20 | GATA transcription factor 20 | ... 920 0.0
> AT2G18380.1 | Symbols: GATA20 | GATA transcription factor 20
| chr2:7982868-7984096 REVERSE LENGTH=706
Length=706
Score = 920 bits (498), Expect = 0.0
Identities = 586/628 (93%), Gaps = 8/628 (1%)
Strand=Plus/Plus
Query 1 ATGATGGGATACCAAACAAACCCTAATTTCTCCATGtttttttCCTCGGAAAATGACGAC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 80 ATGATGGGATACCAAACAAACTCTAATTTCTCCATGTTTTTTTCCTCGGAAAATGACGAC 139
Query 61 CAAAACCACCACAATTACGATCCTTATAATACTTTCTCTTCATCACCTTCTGTTGATTGC 120
|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 140 CAAAACCACCACAACTACGATCCTTATAATAATTTCTCTTCATCAACTTCTGTTGATTGC 199
Query 121 ACTCTCTCACTTGGAACACCCTCCACTCGTCTCGATGATCACCGTAGATTTTCTTCTGCT 180
||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||
Sbjct 200 ACTCTCTCACTTGGAACACCCTCTACTCGTCTCGACGACCACCATAGATTTTCTTCTGCT 259
Query 181 AATTCTAACAACATCTCCGGCGACTTCTACT-TTCACGGAGGAAACGCTAAGACTACGTC 239
|||||||||||||||||||||||||| || | ||||||||||||||||||||||| | ||
Sbjct 260 AATTCTAACAACATCTCCGGCGACTTTTA-TATTCACGGAGGAAACGCTAAGACTTCTTC 318
Query 240 GTACAAGAAGGGTGGTAATGATCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCAC 299
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTACAAGAAGGGTGGTGTTGCTCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCAC 378
Query 300 TTCAACTCCTCTATGGAGAAATGGACCAAAAGGACCTAAGTCGTTATGTAATGCTTGTGG 359
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 379 TTCAACTCCTCTATGGAGAAACGGACCAAAAGGACCTAAGTCGTTATGTAACGCGTGTGG 438
Query 360 AATCCGATTCAAGAAGGAGGAGAGGCGTGCGACGGCCAGAAACTTAACGATATCCGGTGG 419
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 439 AATCCGATTCAAGAAAGAGGAGAGGCGTGCGACGGCCAGAAACTTAACGATCTCCGGTGG 498
Query 420 AGGTTCATCGGCGGCAGAAATTCCGGTAGAGAATCCGTACAACGGAGGTGGAAACTATTA 479
||||||||| ||||||||| | || ||||||||| |||||||||||||||||||||||||
Sbjct 499 AGGTTCATCAGCGGCAGAAGTCCCAGTAGAGAATTCGTACAACGGAGGTGGAAACTATTA 558
Query 480 CAGTCATCATCA-C-T-A-T--GCTTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACA 533
|||||||||||| | | | | || |||||||||||||||||||||||||||||||||||
Sbjct 559 CAGTCATCATCATCATCACTATGCCTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACA 618
Query 534 AAGAGTTGCGTATTTCTCACCGGCACCGGAGATGGAATATCCCTACGTTGATGACGTAAC 593
||||||| | ||||||||||||| ||||||||||||||||||||||| ||| |||| ||
Sbjct 619 AAGAGTTCCATATTTCTCACCGGTTCCGGAGATGGAATATCCCTACGTGGATAACGTCAC 678
Query 594 GGCTGCTTCGTTTATGTCTTGGAATTGA 621
|||| |||| ||||||||||||||||||
Sbjct 679 GGCTTCTTCTTTTATGTCTTGGAATTGA 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5