BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906691
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18420.1 | Symbols: | Gibberellin-regulated family protein ... 416 5e-116
> AT2G18420.1 | Symbols: | Gibberellin-regulated family protein
| chr2:7993801-7994554 FORWARD LENGTH=565
Length=565
Score = 416 bits (225), Expect = 5e-116
Identities = 266/286 (93%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGTATTCAGAGTCCTGCTTGCTTCTCTTCTCATATCTCTTCTTGTCCTCGACTTC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGCTGTATTCAGAGTCTTGCTTGCTTCTCTTCTCATATCTCTTCTTGTCCTCGACTTC 120
Query 61 GTCCATGCCGATATGGTGACGTCGGATAACGCCCCTAAAATCGATTGCAAGAGTAGGTGC 120
|||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||
Sbjct 121 GTCCATGCCGATATGGTGACGTCGAATGACGCCCCTAAAATCGATTGCAACAGCAGGTGC 180
Query 121 CAAGAACGGTGCAGTCTCTCGAGTAGGCCGAATCTTTGTCACAGAGCGTGCGAGACTTGC 180
||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 181 CAAGAGCGGTGCAGTCTTTCGAGTAGGCCAAATCTTTGTCACAGAGCGTGCGGGACTTGC 240
Query 181 TGCGCTAGGTGCAACTGCGTGCCACCGGGCACATACGGAAACTACGACAAGTG-CAAGTG 239
||||||||||||||||||||| |||||||||||| ||||||||||||||| || | |||
Sbjct 241 TGCGCTAGGTGCAACTGCGTGGCACCGGGCACATCCGGAAACTACGACAAATGTCC-GTG 299
Query 240 CTATGCTAGCCTCACCACCCACGGTGGTCGCCGAAAGTGTCCTTAA 285
||||| |||||| ||||||||||| || ||| ||||||||||||||
Sbjct 300 CTATGGTAGCCTAACCACCCACGGAGGACGCAGAAAGTGTCCTTAA 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5