BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906692
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18440.1 | Symbols: GUT15 | GUT15 (GENE WITH UNSTABLE TRANSC... 198 1e-50
> AT2G18440.1 | Symbols: GUT15 | GUT15 (GENE WITH UNSTABLE TRANSCRIPT
15); other RNA | chr2:7995729-7997198 REVERSE LENGTH=1378
Length=1378
Score = 198 bits (107), Expect = 1e-50
Identities = 184/218 (84%), Gaps = 17/218 (8%)
Strand=Plus/Plus
Query 1 ATGTCAGGTGCGCTTGCATGGCAGGTCAAAAAACTGATCCTCAATaaaaaaaaaaGATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 461 ATGTCAGGTGCGCTTGCATGGCAGGTCAAAAAACTGATCCTCAATAAAAAAAA--GATTT 518
Query 61 TGTGGGTTGTGGAGAGGAGATCGCACGGGTTATT-TGTTTTTCCCGGGATCTTTTCTCCT 119
|||||||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||
Sbjct 519 TGTGGGTTTTGGAGAGGAGGTCGCACGGGTTATTAT-TTTTTCCCGGGATCTCTTCTCCT 577
Query 120 CTGTGTGT--C-T-T-GCTTCTGCTCC--CTCTCTCCCTTCCCTATCTCCCTT--TA-CA 169
|||||||| | | | || ||||||| |||||||||| | || || | || || |
Sbjct 578 CTGTGTGTGTCGTCTTGCCTCTGCTCTATCTCTCTCCCTGCTCTTTCACATTTCATATCT 637
Query 170 GT-T-AT-TGCTCATATATACTTAAAAATCGATCATAA 204
| | | |||||||||| ||| ||||| |||||||||
Sbjct 638 TTCTTAAATGCTCATATACACTCAAAAACCGATCATAA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9104544531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5