BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906696
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18470.1 | Symbols: PERK4 | roline-rich extensin-like recept... 2905 0.0
> AT2G18470.1 | Symbols: PERK4 | roline-rich extensin-like receptor
kinase 4 | chr2:8005285-8008052 REVERSE LENGTH=2016
Length=2016
Score = 2905 bits (1573), Expect = 0.0
Identities = 1813/1926 (94%), Gaps = 27/1926 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTCCTGATTCTGCTCCTCCTCCAACAAACTCCAGCTCTTCTCCATCTCCA 60
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||
Sbjct 115 ATGGCTTCTTCTCCTGAATCTG---CTCCTCCAACAAACTCCACCTCTTCTCCATCTCCA 171
Query 61 CCGTCTAATACCAATTCAACCACCTCTTCTCCGCCGGCTCCGTCTCCTCCTTCTCCTACT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CCGTCTAATACCAATTCAACCACCTCTTCTCCGCCGGCTCCGTCTCCTCCTTCTCCTACA 231
Query 121 CCTCCTCAAGGAGACTCGTCATCGTCTCCACCTCCTGGA-TCCACATCTCCACCAGCTCA 179
||||||||||||||||| ||||| || ||||||||| || |||||||||||||||||||
Sbjct 232 CCTCCTCAAGGAGACTCATCATCATCGCCACCTCCT-GATTCCACATCTCCACCAGCTCC 290
Query 180 ACAAGCTCCT-TCTCCTCCTAATTCCTCTAAT-ACTTCGCCTTCACCACCGTCACAAGGC 237
|||||||||| | |||||||||||||||||| || || ||||| || |||||||| |||
Sbjct 291 ACAAGCTCCTAAC-CCTCCTAATTCCTCTAATAAC-TCTCCTTCCCCTCCGTCACAGGGC 348
Query 238 GGTGGAGGAGAAAGAGGAAATGGAGGAAACAGTGGTGGAAATGATTCTCCACCGTCGCGC 297
||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||
Sbjct 349 GGTGGAGGAGAAAGAGGAAATGGAGGAAACAATGGTGGCAATGATACTCCACCGTCACGC 408
Query 298 GGCTCTCCTCCTTCTCCTCCTTCTAGGAGTAATGGAGATAATGGTGGTAGCAGATCATCG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GGCTCTCCTCCTTCTCCTCCTTCTAGGAGTAATGGAGATAATGGTGGTAGCAGATCATCG 468
Query 358 CCACCAGGAGACACTGGAGGCTCTCGCTCGGACAATCCTCCTTCTAGCGGAGGTGCCAGC 417
||||||||||||||||||||||||||||| ||||| |||||||||||| | | |
Sbjct 469 CCACCAGGAGACACTGGAGGCTCTCGCTCAGACAACCCTCCTTCTAGC----G-G--A-- 519
Query 418 GGAAGCAGTggaggtggaggaggaggaggaggaggaAGTAATACGAATACGGCGATCATA 477
|||||||||||| ||||| ||||| ||| | |||||||||||||||| |||||||||
Sbjct 520 GGAAGCAGTGGA---GGAGGTGGAGGTGGA--A-GAAGTAATACGAATACAGCGATCATA 573
Query 478 GTTGGTGTATTAGTCGGAGCTGGACTTTTGATGATCGTTCTTATTATTGTTTGTCTTAGA 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 574 GTTGGTGTATTAGTCGGAGCTGGACTTTTGATGATCGTTCTTATTATTGTGTGTCTTAGA 633
Query 538 CGCAAAAAGAAGAGAAAAGATTCCTTCTACCCTGAATCCATGAAAGGAAATCAATATCAA 597
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 634 CGCAAAAAGAAGAGAAAAGACTCCTTCTACCCTGAACCCATGAAAGGAAACCAATATCAA 693
Query 598 TACTATGGAaacaacaacaacaacaacaaTGCTTCACAGAATTATCCAAATTGGCACCTA 657
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 694 TACTATGG--A-AACAACAACAACAACAATGCTTCACAGAATTATCCGAATTGGCACCTA 750
Query 658 AATGCACAAGGCCAAAACCAACAATCTACTGGTGGTTGGGGAGGCGGTGGACCATCACCA 717
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AATTCACAAGGCCAAAACCAACAATCTACTGGTGGTTGGGGAGGCGGTGGACCATCACCG 810
Query 718 CCTCCTCCCCCGCGGATGCCTACAAGCGGAGAAGATTCTGCCTTGTACTCAGGCCCATCA 777
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 811 CCTCCTCCTCCGCGGATGCCTACAAGCGGAGAAGATTCTTCCATGTACTCAGGCCCATCA 870
Query 778 CGCCCGGTTTTACCTCCTCCTTCGCCTGCTCTAGCCCTCGGATTCAATAAGAGTACTTTT 837
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 871 CGCCCAGTTTTACCTCCTCCTTCGCCTGCTCTAGCCCTCGGATTCAACAAGAGCACTTTT 930
Query 838 ACTTACCAAGAGCTTGCGGCTGCAACGGGAGGGTTTACGGATGCTAACCTCTTGGGACAG 897
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 931 ACTTACCAAGAGCTTGCGGCTGCAACAGGAGGGTTTACGGATGCTAACCTTTTGGGACAG 990
Query 898 GGAGGATTCGGGTATGTCCATAAAGGAGTTTTGCCTAGTGGGAAAGAAGTAGCAGTTAAG 957
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 991 GGAGGATTTGGGTATGTCCATAAAGGAGTCTTGCCTAGCGGGAAAGAAGTAGCAGTTAAG 1050
Query 958 AGCTTAAAAGCGGGTAGCGGACAAGGAGAGAGGGAGTTTCAAGCTGAGGTCGATATCATT 1017
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 AGTTTAAAAGCGGGTAGCGGACAAGGAGAGAGGGAGTTTCAAGCTGAGGTCGATATCATT 1110
Query 1018 AGCCGTGTTCATCATCGATATCTTGTTTCTTTGGTTGGATACTGCATAGCTGATGGACAG 1077
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1111 AGCCGTGTGCATCATCGGTATCTTGTTTCTTTGGTTGGATATTGCATAGCTGATGGACAG 1170
Query 1078 AGGATGTTGGTTTATGAGTTTGTTCCTAACAATACTTTGGAATATCATCTTCATGGGAAA 1137
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1171 AGGATGTTGGTTTATGAGTTTGTTCCTAACAAAACTTTGGAATATCATCTTCATGGGAAA 1230
Query 1138 AATCTTCCGGTAATGGATTTCTCCACTAGATTGCGTATCGCCTTAGGTGCTGCTAAAGGA 1197
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1231 AATCTTCCGGTAATGGAGTTCTCCACTAGGTTGCGTATCGCCTTAGGTGCTGCGAAAGGA 1290
Query 1198 CTCGCTTACCTTCACGAAGACTGCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CTCGCTTACCTTCACGAAGACTGCCATCCTCGGATCATTCACCGCGACATCAAGTCTGCA 1350
Query 1258 AACATTCTCTTGGACTTCAACTTTGATGCAATGGTGGCTGATTTTGGACTGGCAAAGTTA 1317
|| |||||||||||||||||||||||||| |||||||||||||||||| | || ||||||
Sbjct 1351 AATATTCTCTTGGACTTCAACTTTGATGCTATGGTGGCTGATTTTGGATTAGCTAAGTTA 1410
Query 1318 ACTTCTGATAACTACACTCATGTATCTACTCGTGTGATGGGAACTTTTGGTTATGTAGCA 1377
|| ||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 1411 ACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGATATCTAGCT 1470
Query 1378 CCGGAATATGCATCGAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGTGTC 1437
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1471 CCAGAATATGCTTCAAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGAGTT 1530
Query 1438 ATGTTATTGGAACTGATCACTGGAAAACGACCGGTTGATAATAGCAGCACCATGGATGAC 1497
|||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1531 ATGTTATTGGAACTTATAACTGGAAAACGACCGGTTGATAATAGCATCACCATGGACGAC 1590
Query 1498 ACCTTAGTAGATTGGGCTCGGCCTCTTATGGCTCCCGCACTAGAAGATGGAAACTTTAAT 1557
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1591 ACCTTAGTAGATTGGGCTCGGCCTCTTATGGCTCGCGCGCTAGAAGATGGAAACTTTAAT 1650
Query 1558 GAGCTCGCAGATGCAAGGCTTGAAGGCAACTACAACCCGCAAGAAATGGCTCGAATGGTG 1617
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GAGCTCGCAGATGCGAGGCTTGAAGGCAACTACAACCCGCAAGAAATGGCTCGAATGGTG 1710
Query 1618 ACTTGTGCCGCTGCTAGCATTCGCCATTCCGGGCGTAAACGTCCAAAGATGAGCCAGATA 1677
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1711 ACTTGTGCCGCTGCTAGCATTCGTCATTCGGGGCGTAAACGTCCAAAGATGAGCCAGATA 1770
Query 1678 GTAAGAGCATTAGAAGGAGAAGTGTCCTTAGATGCTTTAAACGAAGGTGTGAAGCCAGGA 1737
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 GTAAGAGCGTTAGAAGGAGAAGTGTCCTTAGATGCTTTAAACGAAGGTGTGAAGCCAGGA 1830
Query 1738 CACAGTAACGTTTACGGGACATCGGGAACAAGTTCGGATTATAGTCAGACATCTTACAAT 1797
|||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||
Sbjct 1831 CACAGTAACGTTTACGGGTCATTGGGAGCAAGCTCGGATTATAGTCAGACATCTTACAAT 1890
Query 1798 GCAGACATGAAGAAATTCAGACAGATAGCTTTATCGAGCCAAGAATTCCCAATCAGTGAC 1857
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1891 GCAGACATGAAGAAATTCAGACAGATAGCTTTGTCGAGCCAAGAATTCCCAGTCAGTGAC 1950
Query 1858 TGTGAAGGAACATCTAGTAATGATTCTCGAGAGATGGGACCTAAAAGCCCTGCTCCTCCT 1917
||||||||||||||||||||||||||| |||| |||||| |||| |||||| |||||||
Sbjct 1951 TGTGAAGGAACATCTAGTAATGATTCTAGAGATATGGGAACTAAGAGCCCTACTCCTCCA 2010
Query 1918 CAATGA 1923
|||||
Sbjct 2011 AAATGA 2016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5