BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906699

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:...   388    1e-107
  AT2G18917.1 | Symbols:  | other RNA | chr2:8197114-8198103 FORW...   207    3e-53 


> AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:8194572-8197483 
REVERSE LENGTH=2284
Length=2284

 Score =  388 bits (210),  Expect = 1e-107
 Identities = 226/234 (97%), Gaps = 0/234 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG  300

Query  61   TTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG  120
            ||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG  360

Query  121  TGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACCCTATCATTTATGTTAACACT  180
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  361  TGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACCCTATCATTTATGTTAACACT  420

Query  181  GTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTATTGGTCGAAATTGC  234
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  421  GTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTATTGGTCGAAATTGC  474


> AT2G18917.1 | Symbols:  | other RNA | chr2:8197114-8198103 FORWARD 
LENGTH=831
Length=831

 Score =  207 bits (112),  Expect = 3e-53
 Identities = 124/130 (95%), Gaps = 0/130 (0%)
 Strand=Plus/Minus

Query  1    ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  130  ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG  71

Query  61   TTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG  120
            ||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  70   TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG  11

Query  121  TGTGGTTTTG  130
            ||||| ||||
Sbjct  10   TGTGGGTTTG  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5