BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906700
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18480.1 | Symbols: | Major facilitator superfamily protein... 2381 0.0
> AT2G18480.1 | Symbols: | Major facilitator superfamily protein
| chr2:8009323-8011255 REVERSE LENGTH=1798
Length=1798
Score = 2381 bits (1289), Expect = 0.0
Identities = 1434/1504 (95%), Gaps = 10/1504 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCATGCTGATGCTCATAATTTTCCCGGGTCGGATCAAAACCCCACTCATATGAAC 60
|||||||||||||||| ||||||||||||||| ||||||| ||| || |||||||||||
Sbjct 13 ATGGTTCATGCTGATGGTCATAATTTTCCCGGTTCGGATCCAAA--CC-CTCATATGAAC 69
Query 61 AAGTTCGCTTGCGGGTGTGCCATTGTTGCTTCCATCATTTCTATCATCTTTGGATATGAT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AAGTTCGCTTTCGGGTGTGCCATTGTTGCTTCCATCATTTCTATCATCTTTGGATATGAT 129
Query 121 ACGGGAGTTATGAGCGGAGCTCAGATATTTATAAGAGAGGATCTAAATTTAGACGACACT 180
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 130 ACGGGAGTTATGAGCGGAGCTCAGATATTTATAAGAGATGATCTAAAAATAAACGACACT 189
Query 181 CAGATCGAAGTTTTGGCCGGAATCTTGAATCTTTGTGCCCTCGTCGGATCACTAACGGCG 240
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 190 CAGATTGAAGTTTTGGCCGGAATCTTGAATCTTTGTGCACTCGTCGGATCACTAACGGCG 249
Query 241 GGAAAAACTTCTGACGTCATCGGCCGACGTTACACCATTGCTCTCTCCGCCGTGATATTC 300
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 250 GGGAAAACGTCTGACGTCATCGGCCGACGTTACACCATAGCTCTCTCCGCCGTGATATTC 309
Query 301 TTAGTGGGTTCAGTTCTTATGGGTTACGGCCCAAACTACGCC-GTTTTGATGGTCGGAAG 359
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 310 TTAGTGGGCTCAGTTCTTATGGGTTACGGCCCAAACTA-TCCTGTTTTGATGGTCGGACG 368
Query 360 ATGTATCGCCGGGGTTGGTGTAGGGTTTGCTCTCATGATAGCTCCGGTTTACTCTGCCGA 419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ATGTATTGCCGGAGTTGGTGTAGGGTTTGCTCTCATGATAGCTCCGGTTTACTCTGCCGA 428
Query 420 GATATCCTCTGCTTCACACAGAGGCTTTCTCACTTCTCTACCTGAGCTTTGTATTAGTCT 479
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GATATCCTCTGCGTCACATAGAGGCTTTCTCACTTCTCTACCTGAGCTTTGTATTAGTCT 488
Query 480 TGGGATTTTACTTGGTTATGTCTCGAATTACTGTTTTGGGAAATTGACGTTGAAGCTTGG 539
|||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 489 TGGGATTTTACTAGGCTATGTCTCGAATTACTGTTTTGGGAAACTGACGTTGAAACTTGG 548
Query 540 ATGGAGATTGATGCTTGGAATCGCAGCGTTCCCGTCTTTGATATTGGCTTTTGGGATTAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATGGAGATTGATGCTTGGAATCGCAGCGTTCCCGTCTTTGATATTGGCTTTTGGGATTAC 608
Query 600 AAGAATGCCTGAGTCGCCGAGGTGGCTTGTGATGCAAGGTAGGTTAGAAGAAGCCAAGAA 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAGAATGCCCGAGTCGCCGAGGTGGCTTGTGATGCAAGGTAGGTTAGAAGAAGCCAAGAA 668
Query 660 AATAATGGTTTTGGTATCCAACACAGAAGAAGAAGCCGAAGAACGGTTCAGAGACATCTT 719
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 669 AATAATGGTTTTGGTATCCAATACGGAAGAAGAAGCTGAAGAACGGTTCAGAGACATCTT 728
Query 720 AACCGCTGCGGAAATAGATGAGATAGAGATAAAAGCAG-TGAGTGGCGCCGTT---AAGA 775
||||||||||||| |||||| || ||||||||||| || || |||||| |||| ||||
Sbjct 729 AACCGCTGCGGAAGTAGATGTGACAGAGATAAAAGAAGTTG-GTGGCGGCGTTAAGAAGA 787
Query 776 AGAATCAAGGTAAAAGTGTTTGGAGGGAGTTGGTGATAAAACCGCGACCTGCGGTGCGTT 835
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AGAATCACGGTAAAAGTGTTTGGAGGGAGTTGGTGATAAAACCGCGACCTGCGGTGCGTT 847
Query 836 TGATCCTGATAGCGGCCGTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAAGCCG 895
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 848 TGATCTTGATAGCGGCCGTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAGGCCG 907
Query 896 TCGTGTTGTACAGCCCGAGAATTTTCAAGAAAGCCGGAGTAGTTTCGAAAGACAAGCTCT 955
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 908 TCGTGTTGTACAGCCCGAGAATTTTCAAGAAAGCCGGAGTTGTTTCGAAAGACAAGCTCT 967
Query 956 TACTAGCCACGGTCGGTGTAGGTTTAACTAAGGCCTTTTTCATAATAATAGCTACTTTCT 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 968 TACTAGCCACGGTCGGTGTAGGTTTAACTAAGGCCTTTTTCATAATAATAGCCACTTTCT 1027
Query 1016 TGCTAGACAAGGTAGGTCGGAGAAAGCTTCTATTGACCAGCACGGGTGGGATGGTCTTCG 1075
|||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||
Sbjct 1028 TGCTCGACAAGGTAGGTCGTAGAAAGCTCCTGTTGACCAGTACGGGTGGGATGGTCTTCG 1087
Query 1076 CACTGACCAGTTTAGCGGTTAGTCTCACGATGGTTCAGCGATTTGGGCGGTTAGCGTGGG 1135
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CATTGACCAGTTTAGCGGTTAGTCTCACGATGGTTCAGCGATTTGGGCGGTTAGCGTGGG 1147
Query 1136 CATTGAGTTTAAGCATCGTCTCTACATATGCATTTGTAGCGTTTTTCTCCATTGGGCTTG 1195
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1148 CATTGAGTTTAAGCATCGTCTCTACGTATGCATTTGTAGCTTTTTTCTCCATAGGGCTTG 1207
Query 1196 GGCCTATCACATGGGTGTATAGCTCCGAGATATTCCCGTTGAGACTTAGGGCTCAGGGAG 1255
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GACCTATCACATGGGTGTACAGCTCCGAGATATTCCCGTTGAGACTTAGGGCTCAGGGAG 1267
Query 1256 TGAGCATATGCGTTGCGGTTAATAGGATCATGAATGCGACGGTCTCAATGAGTTTTCTAT 1315
||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1268 CGAGTATAGGTGTTGCGGTTAATAGGATCATGAACGCGACGGTCTCAATGAGTTTTCTGT 1327
Query 1316 CCATGACGAAGGCGATCACGACAGGGGGCGTGTTCTTCGTATTCGCCGGAATAGCCGTGG 1375
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1328 CGATGACGAAGGCGATCACGACAGGGGGCGTGTTCTTCGTATTCGCCGGAATAGCGGTGG 1387
Query 1376 CCGCATGGTGGTTCTTCTTCTTTATGTTGCCGGAGACGAAAGGATTGCCATTGGAGGAGA 1435
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 CGGCATGGTGGTTCTTCTTCTTTATGTTGCCGGAGACGAAAGGATTGCCATTGGAGGAGA 1447
Query 1436 TGGAGAAGCTTTTTGGTGGTGGGGGTCCTCGTGGTGATCGCGACGGACTAGAGATTCAAA 1495
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1448 TGGAGAAGCTTTTTGGTGGTGGGGGTCCTCGTGGTGATCGTGACGGACTTGAGATTCAAA 1507
Query 1496 CTAA 1499
||||
Sbjct 1508 CTAA 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5