BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906707

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17980.1 | Symbols:  | C2 calcium/lipid-binding plant phosph...   346    1e-94


> AT5G17980.1 | Symbols:  | C2 calcium/lipid-binding plant phosphoribosyltransferase 
family protein | chr5:5953596-5956745 
FORWARD LENGTH=3150
Length=3150

 Score =  346 bits (187),  Expect = 1e-94
 Identities = 263/298 (88%), Gaps = 12/298 (4%)
 Strand=Plus/Plus

Query  151  GAGATTGGGCATAGGGTTTACTACGCCGATGAAAAGCCTTCTCCTTTGAAACCGGCGTTA  210
            |||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct  379  GAGATTGGGCTTAGGGTTTACTACGCCGATGAAAAGCCTCCTCCTTTGAAACCGACGGTA  438

Query  211  G---CTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACGACGACAGGA-GCTCGAGA  266
            |   ||||||||||||||||||||||||||||||||||||||| | | ||| | || |||
Sbjct  439  GCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACGAAGGC-GGAAGGTCCAGA  497

Query  267  CGAATCGTCTCAGTCACCACCAGAGACTAATGACAGTTCTT-CTGAAGTGACAGAA-CCT  324
            |||   |||| || ||||||||||||||||||||| ||| | ||||||||| |||| || 
Sbjct  498  CGA---GTCTAAGCCACCACCAGAGACTAATGACA-TTCCTGCTGAAGTGAAAGAAACC-  552

Query  325  GTGGAACCACCACAACCGCCACTGGAGGAGAGTTCTCCAGTCGAAGGTCCCAATACAAAC  384
            ||| ||||||||||||| |||| |||||||||||| |||| ||| ||||||||  || ||
Sbjct  553  GTGAAACCACCACAACCACCACCGGAGGAGAGTTCACCAGCCGAGGGTCCCAAGCCAGAC  612

Query  385  GAGGAAGCCTCACCACCGTTACAAGAAAATGCTACGGTTGGTGGAGAAGAACCACCGG  442
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  613  GAGGAAGCCTCACCACCTTTACAAGAAAACGCTACGGTTGGTGGAGAAGAACCACCGG  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5