BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906742
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12145.1 | Symbols: FLR1, FLOR1 | Leucine-rich repeat (LRR) ... 691 0.0
AT3G12143.1 | Symbols: | pseudogene, similar to polygalacturon... 621 2e-177
> AT3G12145.1 | Symbols: FLR1, FLOR1 | Leucine-rich repeat (LRR)
family protein | chr3:3874499-3876237 REVERSE LENGTH=1405
Length=1405
Score = 691 bits (374), Expect = 0.0
Identities = 562/650 (86%), Gaps = 23/650 (4%)
Strand=Plus/Plus
Query 4 CTCAAGAGCCTCAAC-CTCCTCT-TTATAAAACACACCAATATCTCCGGTCCAATTCCTG 61
||||||| ||||||| || |||| | | || ||||| | | |||||||||| |||||||
Sbjct 502 CTCAAGAACCTCAACACT-CTCTACT-TGAAGCACACTAGTCTCTCCGGTCCGATTCCTG 559
Query 62 ATAACATCAGCGACCTCAAGAACCTCACTTTCTTGGACCTTTCCTATAACCAATTGACTG 121
|| |||||||||| ||||||| |||||| |||||||||||||| | ||||||||| || |
Sbjct 560 ATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCTTTTAACCAATTTACCG 619
Query 122 GTCCAATTCCCGGTTCGCTATCTCAGATGCCCAAGCTTGAAGCCATTGAGATCCATGATA 181
||||||||||||||||||||||||||||||| ||||||||||||||| | ||| | ||||
Sbjct 620 GTCCAATTCCCGGTTCGCTATCTCAGATGCCGAAGCTTGAAGCCATTCAAATCAACGATA 679
Query 182 ATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTGAA- 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 680 ATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCT-AAT 738
Query 241 CTCGACTTGTCTAACAATCAGCTCTCAGGGAAAATACCGGAATCGTTGTCAAAATACGAC 300
||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||
Sbjct 739 CTCTACTTGTCTAACAATAAGCTGTCAGGAAAAATACCGGAATCGTTGTCTAAATACGAC 798
Query 301 TTCAACGCAGTGT-TTCTGTCGGGAAATAGTTTC-ACCGGAGATGG-TTCCATGTTTTTC 357
|||||||||||| || ||||||||||| ||||| | ||||||| || ||||| |||
Sbjct 799 TTCAACGCAGTGGATT-TGTCGGGAAATGGTTTCGAA-GGAGATGCCTTT-ATGTTCTTC 855
Query 358 GGACGGAACAAAACAACAAG-ACAACTGGATCTGTCGAGAAACATGTTTCAGTTCGATCT 416
|||||||||||||||||| | || | ||||| ||||||||||||||||| | ||||||||
Sbjct 856 GGACGGAACAAAACAACA-GTACGAGTGGATTTGTCGAGAAACATGTTTAATTTCGATCT 914
Query 417 C-TCCAAGATTGAGTTCGCTAGGAGCATACTTACGTTGGATCTGAGCCAAAATCGA-ATC 474
| || ||| || |||||||||| |||||| || |||||||||||||||| || | | |||
Sbjct 915 CGTC-AAGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCAGAACC-ATATC 972
Query 475 TTCGGTAAGATTCCTCGGGTACTGACTACCCTACGAAGTCTCGAGCGTTTCAACGTGAGC 534
| ||| ||||| || | | |||||||| |||| | ||||||| |||||||||||||
Sbjct 973 TACGGGAAGATACCACCAGCACTGACTAAACTAC-AC--CTCGAGCATTTCAACGTGAGC 1029
Query 535 TACAAT-AGTCTCTGCGGGAAAATCCCAAGTGGCGGTCGACTTCAGACCTTTGAACCATC 593
|||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1030 GACAACCA-TCTCTGCGGAAAAATCCCAAGTGGCGGTCTACTTCAGACCTTTGAACCATC 1088
Query 594 TGCCTACTCTCATAACCTCTGTCTTTGTGGGACTCCGCTTAAGGCTTGTT 643
||||| | |||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 1089 TGCCTTCGCTCACAACATCTGTCTTTGTGGAACTCCCCTTAAGGCTTGTT 1138
> AT3G12143.1 | Symbols: | pseudogene, similar to polygalacturonase-inhibitor
protein, blastp match of 53% identity and 7.5e-64
P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor
protein {Citrus sp. cv. Sainumphung} |
chr3:3872314-3873608 REVERSE LENGTH=1295
Length=1295
Score = 621 bits (336), Expect = 2e-177
Identities = 366/381 (96%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 265 TCAGGGAAAATACCGGAATCGTTGTCAAAATACGACTTCAACGCAGTGTTTCTGTCGGGA 324
||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||
Sbjct 771 TCAGGGAAAATACCGGAGTCATTGTCAAAACACGACTTCAACGCTGTGTTTCTGTCGGGA 830
Query 325 AATAGTTTCACCGGAGATGGTTCCATGTTTTTCGGACGGAACAAAACAACAAGACAACTG 384
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AACAGTTTAACCGGAGATGGTTCCATGTTTTTCGGACGGAACAAAACAACAAGACAACTG 890
Query 385 GATCTGTCGAGAAACATGTTTCAGTTCGATCTCTCCAAGATTGAGTTCGCTAGGAGCATA 444
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 891 GATCTGTCGAGAAACATGTTTCAGTTCGATATCTCCAAGATTGAGTTCGCTAGGAGCATA 950
Query 445 CTTACGTTGGATCTGAGCCAAAATCGAATCTTCGGTAAGATTCCTCGGGTACTGACTACC 504
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 951 CTTACGTTGGATCTGAGCCAAAACCGAATCTTTGGTAAGATTCCTCGGGTGTTGACTACC 1010
Query 505 CTACGAAGTCTCGAGCGTTTCAACGTGAGCTACAATAGTCTCTGCGGGAAAATCCCAAGT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CTACGAAGTCTCGAGCGTTTCAACGTGAGCTACAATAGTCTCTGCGGGAAAATCCCAAGT 1070
Query 565 GGCGGTCGACTTCAGACCTTTGAACCATCTGCCTACTCTCATAACCTCTGTCTTTGTGGG 624
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1071 GGCGGTCGCCTTCAGACCTTTGAACCATATGCCTACTCTCACAACCTCTGTCTTTGTGGG 1130
Query 625 ACTCCGCTTAAGGCTTGTTGA 645
|||| ||||||||||||||||
Sbjct 1131 ACTCTGCTTAAGGCTTGTTGA 1151
Score = 442 bits (239), Expect = 2e-123
Identities = 259/269 (96%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 1 ATGCTCAAGAGCCTCAACCTCCTCTTTATAAAACACACCAATATCTCCGGTCCAATTCCT 60
||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 434 ATGCTCAAGAGTCTCAACCTCCTCTTTATAAAACACACCAATTTCTCCGGTCCGATTCCT 493
Query 61 GATAACATCAGCGACCTCAAGAACCTCACTTTCTTGGACCTTTCCTATAACCAATTGACT 120
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
Sbjct 494 GATAACATCAGCGACCTCAAGAACCTCACGTTCTTGGACCTTTCCTTTAACCAATTTCCC 553
Query 121 GGTCCAATTCCCGGTTCGCTATCTCAGATGCCCAAGCTTGAAGCCATTGAGATCCATGAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 554 GGTCCAATTCCCGGTTCGCTATCTCAGATGCCCAAGCTTGAAGCCATTGAGATCCACGAC 613
Query 181 AATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 AATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTGAA 673
Query 241 CTCGACTTGTCTAACAATCAGCTCTCAGG 269
|||||||||||||||||||||||||||||
Sbjct 674 CTCGACTTGTCTAACAATCAGCTCTCAGG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5