BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906745
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16130.1 | Symbols: PMT2, ATPMT2 | polyol/monosaccharide tra... 2410 0.0
AT2G16120.1 | Symbols: PMT1, ATPMT1 | polyol/monosaccharide tra... 2183 0.0
> AT2G16130.1 | Symbols: PMT2, ATPMT2 | polyol/monosaccharide transporter
2 | chr2:7002322-7004043 FORWARD LENGTH=1536
Length=1536
Score = 2410 bits (1305), Expect = 0.0
Identities = 1460/1537 (95%), Gaps = 2/1537 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTGTTGCGGATTCCGAGCCGCCTAGAGGG 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTGTTGCCGAGTCCGAGCCGCCAAGAGGG 60
Query 61 AATAGAAGTCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCTT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATAGAAGCCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCTT 120
Query 121 GGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAACTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAGCTG 180
Query 181 TCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGATCGGTTCA 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 TCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAATATCTATTCTCTGATCGGTTCA 240
Query 241 GGCGCGGCTGGTAGAACTTCTGATTGGATCGGAAGACGATATACCATAGTGTTGGCAGGA 300
|| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGCAGCTGGAAGAACTTCCGATTGGATCGGAAGACGATATACCATAGTGTTGGCAGGA 300
Query 301 GCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTATCCTTTCATTATG 360
|||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 301 TTCTTCTTCTTTTGTGGAGCCCTACTAATGGGTTTTGCCACTAACTATCCTTTCATTATG 360
Query 361 GTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTTAC 420
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GTCGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTACGCTATGATGATTGCGCCTGTTTAT 420
Query 421 ACCGCTGAAGTCGCTCCTGCCTCCTCTCGTGGTTTCCTTAGCTCTTTCCCTGAGATATTT 480
||| | ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 421 ACCACGGAAGTCGCTCCAGCCTCTTCTCGAGGCTTCCTTAGCTCTTTCCCTGAGATATTT 480
Query 481 ATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAGAG 540
Query 541 CACCTCGGATGGAGGTTCATGTTAGGGATTGGAGCGGTGCCCTCAGTGTTTCTAGCCATT 600
||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 541 CACATTGGATGGAGGTTCATGTTAGGTATTGGAGCTGTGCCCTCAGTGTTTCTAGCCATT 600
Query 601 GGAGTTTTGGCAATGCCTGAGTCTCCACGGTGGCTCGTCATCCAGGGTCGTCTCGGGGAC 660
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 601 GGAGTGTTGGCAATGCCCGAGTCTCCACGGTGGCTCGTCATGCAGGGTCGTCTAGGGGAC 660
Query 661 GCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCAAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCAAT 720
Query 721 GACATCAAACGCGCGGCCGGAATCCCCGATGATATGACCGACGATGTTATAGTCGTTCCC 780
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 GACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTCCG 780
Query 781 AACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGTCC 840
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGTCC 840
Query 841 GTCCGACACATTCTTATAGCATGCCTTGGCATCCACTTCGCCCAACAAGCCTCCGGAATT 900
|| |||||||| || |||||||||||||| ||||| ||| |||| |||||||||||||||
Sbjct 841 GTTCGACACATCCTCATAGCATGCCTTGGTATCCATTTCTCCCAGCAAGCCTCCGGAATT 900
Query 901 GATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGAAT 960
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATGCTGTCGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGAAT 960
Query 961 GACCAGCTCTTAGCTACAGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAGGA 1020
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTAGTAGGA 1020
Query 1021 ACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAATG 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 ACTTGTTTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAATG 1080
Query 1081 TTTATTTCCTTGACCTTGCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGCAA 1140
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTTTTTCCTTGACCGCCCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGCAA 1140
Query 1141 ACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACAGTGATGACTTTTGTGGCAACATTC 1200
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1141 ACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTCGCAACATTC 1200
Query 1201 TCAATAGGTGCAGGCCCAGTGACGTGGGTCTACTGC-TCAGAGATATTCCCCGTGAGGCT 1259
||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 1201 TCATTAGGTGCAGGCCCCGTGACGTGGGTCTAC-GCCTCAGAGATATTCCCCGTGAGGCT 1259
Query 1260 AAGAGCTCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTATAGG 1319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGAGCGCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTATAGG 1319
Query 1320 AATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGTGGTGCCTTCCTTCTCTTCGC 1379
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1320 AATGACATTCCTATCTCTTTCTAAGGGTCTCACCATCGGTGGTGCATTCCTTCTCTTCGC 1379
Query 1380 CGGAGTAGCGGCTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTGT 1439
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGGAGTTGCGGTTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTGT 1439
Query 1440 GCCTTTAGAAGAAATGGAGAGTCTCTTTGGGAGCTACACCGCAAACAAAAAGAACAATGT 1499
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1440 GCCTTTAGAAGAAATAGAGAGTCTCTTCGGGAGCTACAGCGCAAACAAAAAGAACAATGT 1499
Query 1500 TATGACCAAAGGGAAACAAGTCGTTGATGAACAATGA 1536
||||| ||||||||||||||| |||||||||||||||
Sbjct 1500 TATGAGCAAAGGGAAACAAGTAGTTGATGAACAATGA 1536
> AT2G16120.1 | Symbols: PMT1, ATPMT1 | polyol/monosaccharide transporter
1 | chr2:6996727-6998441 REVERSE LENGTH=1536
Length=1536
Score = 2183 bits (1182), Expect = 0.0
Identities = 1421/1539 (92%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTG-TTGCGGATTCCGAGCCGCCTAGAGG 59
|||| |||||| |||| |||| |||||||| || ||||||| || ||||| || || ||
Sbjct 1 ATGAATTCCTCGGGAGTTGAACAAGGTGTTG-TGATTGCGGAGTCAGAGCCACCGAGGGG 59
Query 60 GAATAGAAGTCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCT 119
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAATAGAAGCCGATATGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCT 119
Query 120 TGGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAACT 179
|||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TGGTTACGACATTGGAGTGATGAGTGGAGCTTCAATTTTCATAAAAGACGATTTGAAACT 179
Query 180 GTCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGATCGGTTC 239
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GTCTGATGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGGTCGGTTC 239
Query 240 AGGCGCGGCTGGTAGAACTTCTGATTGGATCGGAAGACGATATACCATAGTGTTGGCAGG 299
||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 240 CGGCGCAGCTGGTAGAACTTCTGATTGGCTCGGAAGACGATATACAATAGTGTTGGCAGG 299
Query 300 AGCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTATCCTTTCATTAT 359
|||||||||||||||||| ||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 300 AGCCTTCTTCTTTTGCGGAGCCCTACTAATGGGCTTTGCCACAAACTACCCTTTCATAAT 359
Query 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTTA 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTTGGTTATGCTATGATGATTGCGCCTGTTTA 419
Query 420 CACCGCTGAAGTCGCTCCTGCCTCCTCTCGTGGTTTCCTTAGCTCTTTCCCTGAGATATT 479
|||||||||||||||||| ||||| || || || ||||||| ||||||||||||||| ||
Sbjct 420 CACCGCTGAAGTCGCTCCCGCCTCTTCCCGAGGCTTCCTTACCTCTTTCCCTGAGATTTT 479
Query 480 TATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAGA 539
|||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 480 TATCAATATTGGTATACTTTTGGGATACGTATCCAATTACTTCTTCTCCAAGCTTCCCGA 539
Query 540 GCACCTCGGATGGAGGTTCATGTTAGG-GATTGGAGCGGTGCCCTCAGTGTTTCTAGCCA 598
||||||||||||||||||||||||||| | | |||||||| ||||| ||||| |||||||
Sbjct 540 GCACCTCGGATGGAGGTTCATGTTAGGTG-TAGGAGCGGTTCCCTCGGTGTTCCTAGCCA 598
Query 599 TTGGAGTTTTGGCAATGCCTGAGTCTCCACGGTGGCTCGTCATCCAGGGTCGTCTCGGGG 658
||||||| ||||||||||| |||||||| |||||||||||| | ||||||||||||||||
Sbjct 599 TTGGAGTGTTGGCAATGCCGGAGTCTCCTCGGTGGCTCGTCCTTCAGGGTCGTCTCGGGG 658
Query 659 ACGCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCA 718
| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 659 ATGCTTTTAAAGTCCTTGACAAAACCTCCAACACCAAAGAAGAAGCTATCTCTAGGCTCG 718
Query 719 ATGACATCAAACGCGCGGCCGGAATCCCCGATGATATGACCGACGATGTTATAGTCGTTC 778
|||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 719 ATGACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTC 778
Query 779 CCAACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGT 838
| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CGAATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGT 838
Query 839 CCGTCCGACACATTCTTATAGCATGCCTTGGCATCCACTTCGCCCAACAAGCCTCCGGAA 898
|||| |||||||| || |||||||||||||| || || |||||||| |||||||| ||||
Sbjct 839 CCGTTCGACACATCCTCATAGCATGCCTTGGTATTCATTTCGCCCAGCAAGCCTCTGGAA 898
Query 899 TTGATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGA 958
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 899 TTGATGCGGTTGTGCTTTACTCTCCGACAATCTTCTCAAAGGCTGGACTGAAGTCCAAGA 958
Query 959 ATGACCAGCTCTTAGCTACAGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAG 1018
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAG 1018
Query 1019 GAACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAA 1078
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGACTTGTGTGGTGGATCGGTTCGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAA 1078
Query 1079 TGTTTATTTCCTTGACCTTGCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGC 1138
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 TGTTTCTTTCCTTGACCGCACTTGGAACTAGTCTCACGGTGATCAACAGGAACCCCGGGC 1138
Query 1139 AAACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACAGTGATGACTTTTGTGGCAACAT 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 AAACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTGGCAACAT 1198
Query 1199 TCTCAATAGGTGCAGGCCCAGTGACGTGGGTCTACTGCTCAGAGATATTCCCCGTGAGGC 1258
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TCTCAATAGGTGCAGGCCCCGTGACGTGGGTCTACTGCTCAGAGATATTCCCTGTGAGGC 1258
Query 1259 TAAGAGCTCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTATAG 1318
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1259 TAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTATTG 1318
Query 1319 GAATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGTGGTGCCTTCCTTCTCTTCG 1378
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1319 GAATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGCGGTGCGTTCCTTCTATTCG 1378
Query 1379 CCGGAGTAGCGGCTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTG 1438
||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCGGAGTTGCTGCCGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTA 1438
Query 1439 TGCCTTTAGAAGAAATGGAGAGTCTCTTTGGGAGCTACACCGCAAACAAAAAGAACAATG 1498
| ||| |||| || ||||||| |||||| |||||||||||||||||||| ||||| |||
Sbjct 1439 TACCTCTAGAGGAGATGGAGACTCTCTTCGGGAGCTACACCGCAAACAAGAAGAATAAT- 1497
Query 1499 T-TATGACCAAAGGGAAACAAGTCGTTGATGAACAATGA 1536
| ||||| ||||| || |||| || |||| |||||||
Sbjct 1498 TCTATGAGCAAAGACAATGAAGTTGTGGATGGACAATGA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5