BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906756

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01410.1 | Symbols:  | Late embryogenesis abundant (LEA) hyd...   272    3e-72


> AT4G01410.1 | Symbols:  | Late embryogenesis abundant (LEA) hydroxyproline-rich 
glycoprotein family | chr4:578165-579169 
FORWARD LENGTH=1005
Length=1005

 Score =  272 bits (147),  Expect = 3e-72
 Identities = 171/183 (93%), Gaps = 0/183 (0%)
 Strand=Plus/Plus

Query  67   AAATCTACGGTGGTGATAGCTCCGGTGATTGGAGGCAACGGTATACCAGTTTCGCCGGAA  126
            ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  561  AAATCTACGGTTGTGATAGCTCCGGTGATGGGAGGCAACGGTATACCAGTCTCGCCGGAA  620

Query  127  GTAGCTAACGGTTTGAAGAATGATGAAGCTTACGGTGTCGTTTTGATGAGAGTGGTGATT  186
            |||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  621  GTAGCTAATGGTTTAAAAAATGATGAAGCTTACGGCGTCGTTTTGATGAGAGTGGTGATT  680

Query  187  TTAGGGAGGCTCCGATGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTATGCa  246
            || |||||||| || ||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  681  TTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAAGACTGGACGGTATGGATTTTACGCC  740

Query  247  aga  249
            |||
Sbjct  741  AGA  743



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30090254053


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5