BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906767
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16380.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 2440 0.0
AT1G36580.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 130 5e-29
> AT2G16380.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr2:7085784-7089157 FORWARD LENGTH=2055
Length=2055
Score = 2440 bits (1321), Expect = 0.0
Identities = 1554/1664 (93%), Gaps = 25/1664 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGACACCAAACAAGATATGGAGAATTCAGATGATGGGAGAAAGATAGTGAAGATG 60
||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||
Sbjct 113 ATGGCTGACACCAAACAAGATATGGAGAATTCAGAGGATGGAAGGAAGCTAGTGAAGATG 172
Query 61 AGCTCGCTTAAACAGAAAGCAATAAGTGCATCAAATAGATTCAAGAACTCGTTCAAGAAG 120
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 173 AGCTCGCTTAAACAGAAAGCGATAAGCGCATCAAATAGATTCAAGAACTCTTTCAAGAAG 232
Query 121 AAGACTCGGAGGACCAGCAGCAAAATCGTGTCCGCAGCCAATACAGATGACATCAATGGG 180
|||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||
Sbjct 233 AAGACTCGGAGGACCAGCAGCAAAATTGTGTCCGTAGCCAATACAGACGACATCAACGGG 292
Query 181 GAGGATTATCTGTCTGTGGAAGCGTTCCGTCAAGTCCTTGTCCTCGACGACCTTTTGCCT 240
|| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 293 GACGATTATCTGTCCGTGGAAGCGTTCCGTCAAGTCCTCGTCCTTGACGACCTTTTGCCC 352
Query 241 TCCAAATACGACGATCTTCACATGATGCTCAGATTCTTAAGGGCGAGAAAATTTGACATT 300
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CCCAAACACGATGATCTTCACATGATGCTCAGATTCTTAAGGGCGAGAAAATTTGACAAA 412
Query 301 GAGAAAGCAAAGCAAATGTGGAGTGACATGCTTCAATGGAGGATGGATTTTGGAGTCGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 413 GAGAAAGCAAAGCAAATGTGGAGTGACATGCTTCAATGGAGGATGGATTTCGGAGTCGAT 472
Query 361 ACAATCATTGAGGATTTCGAGTTTGGAGAGATCGATGAAGTACTCCAACATTATCCGCAA 420
||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 473 ACAATCATTGAGGATTTCGAGTTTGAAGAGATCGATCAAGTACTCAAACATTATCCGCAA 532
Query 421 GGTTATCATGGAGTAGACAGAGAAGGCAGACCTGTTTACATTGAGAGATTAGGTCAAATC 480
||||| |||||||| |||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 533 GGTTACCATGGAGTGGACAAAGAAGGCAGGCCGGTTTACATTGAGAGATTAGGTCAAATC 592
Query 481 GATGCAAACAAGCTGTTACAAGCGACTACAATGGACCGGTATGAGAAATACCATGTGAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GATGCAAACAAGCTGTTACAAGCGACTACAATGGACCGGTATGAGAAATACCATGTGAAA 652
Query 541 GAGTTCGAGAAGATGTTCAAGATCAAGTTCCCTTCTTGCTCTGCCGCAGCCAAGAAGCAC 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAGTTCGAGAAGATGTTTAAGATCAAGTTCCCTTCTTGCTCTGCCGCAGCCAAGAAGCAC 712
Query 601 ATTGACCAAAGCACAACCATTTTTGATGTGCAAGGCGTGGGGCTTAAGAACTTCAACAAA 660
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 713 ATTGACCAAAGCACAACCATTTTTGATGTCCAAGGAGTGGGGCTTAAGAACTTCAACAAA 772
Query 661 TCCGCGAGAGAGCTGCTTCAGCGACTTCTCAAGATCGATAATGACAATTACCCTGAGACT 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 TCCGCGAGAGAGCTGCTTCAGCGCCTTCTCAAGATCGATAATGACAATTACCCTGAGACT 832
Query 721 TTGAACAGAATGTTCATCATCAATGCCGGTCCTGGATTCCGGCTCTTGTGGGGTCCAATT 780
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 833 TTGAACAGAATGTTCATCATCAATGCTGGTCCTGGATTCCGGCTCTTGTGGGCTCCAATT 892
Query 781 AAAAAGTTCCTTGATCCAAAAACGACATCAAAGATACATGTTCTTGGGCACAAATACCAG 840
||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 893 AAAAAGTTCCTCGATCCAAAAACGACATCAAAGATTCATGTTCTTGGGAACAAATACCAA 952
Query 841 CCCAAATTGCTCGAAGCCATCGACCCTAGCGAGTTGCCACATTTCTTTGGCGGCCTTTGC 900
|||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 953 CCCAAATTGCTCGAAGCCATAGACGCTAGCGAGTTGCCATATTTCTTTGGCGGCCTTTGT 1012
Query 901 ACTTGTGCAGACAAAGGTGGCTGCTTGCGATCTGACAAAGGCCCATGGAATGATCCTGAG 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1013 ACTTGTGCAGACAAAGGTGGCTGTTTGCGATCTGACAAAGGCCCATGGAATGATCCTGAG 1072
Query 961 CTTCTTAAGATAGCTAAGAGCCCTGACGCCAGATTCTCGACAATTTCAGAGGATGACCAC 1020
|||||||||||||||| || |||||| |||||||||||||||||||||||||| ||| ||
Sbjct 1073 CTTCTTAAGATAGCTAGGAACCCTGAAGCCAGATTCTCGACAATTTCAGAGGAAGACTAC 1132
Query 1021 TTGCTTGTAGAAGAAGGAACATCAATGTCGATGGTCTTTGAACCTCTAGAGAGAAACAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TTGCTTGTAGAAGAAGGAACATCAATGTCGATGGTCTTTGAACCTCTAGAGAGAAACAAG 1192
Query 1081 ATGAAAACAATCGAAGAGAATGTGAGTGAGAAGCACATTGCCGCGGTTGACAAGTTCATG 1140
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1193 ATGAAAACCATCGAAGAGAATGTGAGTGAGAAGCACATTGACGCGGTTGACAAGTTCATG 1252
Query 1141 GCTTTGTCTTTGCCTCCAAAAGCTCATTTAAAAACCCTAAGAAAAGGTCTACACTGTTAC 1200
||| |||||||||| || ||| ||||||||||||||||||||||||| | |
Sbjct 1253 GCTCTGTCTTTGCCACCGAAACCTCATTTAAAAACCCTAAGAAAAGG--------G--A- 1301
Query 1201 GTAGGGAAGGAGCCACAAAAGAAAGACGATGGATTTCTTGTGGGAGGGGTTATCGCTTTT 1260
| | | |||||||||||||||| ||| | |||||||||||||||||||| ||||||
Sbjct 1302 --A---A-G-AGCCACAAAAGAAAGATGATAGCTTTCTTGTGGGAGGGGTTATTGCTTTT 1354
Query 1261 GTAATGGGAATTGTTGCAATGCTCCGGCTATCTAAAGACGTTCCAAGGAAGCTCACAGAT 1320
|| |||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1355 GTGATGGGAATTGTTGCAATGCTCCGGCTATCTAAAGCCGTTCCAAGGAAGCTTACTGAT 1414
Query 1321 GCTGCATTATTCGGC-AACTCAGTTTACTACGAGGAATCAAAAATGTCTAAACCTAACCA 1379
| ||||||||| | | ||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 1415 GTTGCATTATT-GACCAACTCAGTTTACTACGAGGAAGCAAAAATGTCTAAGCCAAACCA 1473
Query 1380 AGATCAA-TTTC--CAGCACCAGTCTCAAGCTCCGAGTACACAATTATGGTGAAACGTAT 1436
|||| || |||| || |||||||||| ||||| |||||| ||||||||| ||||||||
Sbjct 1474 AGATGAAGTTTCAGCACCACCAGTCTCTAGCTCTGAGTACGTAATTATGGTCAAACGTAT 1533
Query 1437 GGCCGAGCTTGAAGAAAAGTACAAGTCCCTTGACTCAAAATCAGCAGATGATGCTTTAGA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1534 GGCCGAGCTTGAAGAAAAGTACAAGTCCCTTGACTCAAAATCAGCAGATGAAGCTTTAGA 1593
Query 1497 GAAAGAGGATAAACTTCAGGCTGCGCTTAACCGAGTTCAAGTGCTTGAGCATGAGTTATC 1556
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1594 GAAAGATGATAAACTTCAGGCTGCGCTGAACCGGGTTCAAGTGCTTGAGCATGAGTTATC 1653
Query 1557 TGAGACCAAAAAGGCTTTGGATGAAACGATGGTTAACCAGA-AGGGGATTCTTGAATATA 1615
||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||
Sbjct 1654 TGAGACCAAAAAGGCTTTGGATGAAACGATGGTTAACCA-ACAGGGTATTCTTGCATATA 1712
Query 1616 TTGagaagaaaaagaagaagaagagaCTGTTTTTCAGGTTCTAA 1659
||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1713 TTGAGAAGAAAAATAAGAAGAAGAGAATGTTCTTCAGGTTCTAA 1756
> AT1G36580.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: short-chain dehydrogenase-reductase B (TAIR:AT3G12800.1);
Has 109 Blast hits to 109 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:13816459-13818556
REVERSE LENGTH=875
Length=875
Score = 130 bits (70), Expect = 5e-29
Identities = 86/93 (92%), Gaps = 4/93 (4%)
Strand=Plus/Plus
Query 1447 GAAGAAAAGTACAAGTCCCTTGACTCAAAATCAGCAGATGATGCTTTAGAGAAAGAGGAT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GAAGAAAAGTACAAGTCCCTTGACTCAAAATCAGCAGATGATGCTTTAGAGAAAGAGGAT 623
Query 1507 AAACTTCAGGCTGCGCTTA--ACCGAGTTCAAG 1537
||||||| || | ||||| |||| |||||||
Sbjct 624 AAACTTC-GG-TCCGCTTTTGACCGGGTTCAAG 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5