BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906772
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16430.2 | Symbols: PAP10, ATPAP10 | purple acid phosphatase... 2124 0.0
> AT2G16430.2 | Symbols: PAP10, ATPAP10 | purple acid phosphatase
10 | chr2:7120419-7122832 REVERSE LENGTH=1550
Length=1550
Score = 2124 bits (1150), Expect = 0.0
Identities = 1340/1429 (94%), Gaps = 23/1429 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCGTGTCCGAAAATCAGATTTCTTTTCCATAGTTCTTGTTCTGTGTTTTGTCCTC 60
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 61 ATGGGTCGTGTCCGAAAATCAGATTTCGGTTCCATTGTTCTTGTTCTGTGTTGTGTCCTA 120
Query 61 AACAGCTTACTCTGTAATGGAGGTATCACCAGTAGATATGTCAGAAAATTAGAAGCAACC 120
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AATAGCTTACTCTGTAATGGAGGCATCACCAGTAGATATGTCAGAAAATTAGAAGCAACC 180
Query 121 GTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGTTACAATGCTCCTCAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAA 240
Query 181 CAGGTGCATATAACACAAGGAGATGTAGAAGGGAAGGCAGTGATAGTATCATGGGTTACA 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 CAGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACA 300
Query 241 CAAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCTCTAAAAAGCAC 300
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 301 CAAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCACCAAAAAGCAC 360
Query 301 AAAGCTTATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTATATCCAT 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AAAGCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCAT 420
Query 361 CATTGCCCCATCAGAAACTTAGAGGTTGTGGTTTTCTTATTAGAGTATGACACCAAGTAC 420
|||||||| ||||| | | | | |||||||||||||||||||||
Sbjct 421 CATTGCCCTATCAG--A---A-A------------C---TTAGAGTATGACACCAAGTAC 459
Query 421 TATTATGTGGTAGGTGTGGGACAAACAGAGCGTATGTTCTGGTTCTTCACTCCTCCTGAG 480
||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 460 TATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAG 519
Query 481 ATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGGGGATCTTGGGCAGAGTTATGAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGGGGATCTTGGGCAGAGTTATGAC 579
Query 541 TCAAACATAACCTTGACACATTATGAGAATAATCCAACAAAAGGGCAAGCGGTTTTGTTT 600
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 580 TCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTC 639
Query 601 GTCGGCGATATCTCATACGCTGATACTTATCCAGATCATGACAATAGGAGATGGGATAGT 660
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 640 GTCGGCGATATCTCATACGCTGATACTTATCCGGATCATGACAATAGGAGATGGGACAGT 699
Query 661 TGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCATGGATTTGGACTACCGGAAAC 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 700 TGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAAC 759
Query 721 CATGAACTCGATTTTGCCCCCGAGATTGGGGAAAACAGACCGTTTAAGCCATTCACGCAT 780
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 760 CATGAACTCGATTTTGCCCCGGAGATTGGTGAAAACAGACCGTTTAAGCCGTTCACGCAT 819
Query 781 AGGTACCGTACTCCTTACCGATCATCAGGCAGCACAGAACCATTCTGGTACTCGATTAAG 840
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 820 AGGTACCGAACTCCTTACCGATCATCAGGCAGCACCGAACCATTCTGGTACTCGATAAAG 879
Query 841 AGAGGATCGGCTTACATAATCGTGTTAGCTTCATATTCAGCATATGGAAAATACACTCCG 900
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 880 AGAGGACCGGCTTACATAATCGTGCTAGCTTCATATTCAGCATATGGAAAATACACACCA 939
Query 901 CAATACCAATGGCTCGAAGAGGAGTTCCCAAAAGTTAACAGGACGGAAACTCCGTGGTTG 960
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 940 CAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTG 999
Query 961 ATTGTTCTGATGCATTCACCGTGGTACAACAGCTATGATTACCATTACATGGAAGGTGAA 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1000 ATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCATTACATGGAAGGTGAA 1059
Query 1021 ACCATGAGAGTGATGTATGAGGCGTGGTTTGTCAAGTACAAAGTAGATGTTGTCTTTGCA 1080
|| ||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1060 ACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCA 1119
Query 1081 GGTCATGTCCATGCCTACGAAAGATCGGAACGTGTGTCAAACATAGCTTACAATGTTGTT 1140
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1120 GGTCATGTCCACGCCTACGAAAGATCGGAACGTGTATCAAACATAGCTTACAATGTTGTT 1179
Query 1141 AACGGCATTTGCACTCCAGTCAAAGATCAATCTGCTCCAGTCTACATCACCATTGGTGAT 1200
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1180 AACGGCATTTGCACTCCAGTCAAAGATCAATCAGCTCCAGTCTATATCACCATTGGTGAT 1239
Query 1201 GGAGGAAATCTTGAGGGATTGGCCACCAAAATGACTGAGCCTCAGCCTAAGTACTCTGCC 1260
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1240 GGAGGCAATATTGAGGGCTTGGCTACCAAAATGACTGAGCCTCAGCCTAAGTACTCTGCC 1299
Query 1261 TACAGAGAAGCAAGCTTCGGGCATGCGATATTCTCGATAAAGAACAGGACGCACGCTCGC 1320
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1300 TTTAGAGAAGCAAGCTTCGGGCATGCTATATTCTCGATAAAGAACAGGACGCATGCTCAC 1359
Query 1321 TATGGATGGCACAGGAACCATGATGGTTACGCCGTTGAGGGTGACAGGATGTGGTTTT-T 1379
||||||||||| ||||||||||||||||| || || ||||||||||| |||||||||| |
Sbjct 1360 TATGGATGGCATAGGAACCATGATGGTTATGCTGTGGAGGGTGACAGAATGTGGTTTTAT 1419
Query 1380 CAACAGATTCTGGCATCCTATTGATGATTCTCCTTCATGTAATTCTTGA 1428
|||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1420 -AACAGATTTTGGCATCCTGTTGATGATTCTCCTTCTTGTAATTCTTGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5