BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906773
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03640.1 | Symbols: GLUC, BGLU25 | beta glucosidase 25 | chr... 344 2e-94
> AT3G03640.1 | Symbols: GLUC, BGLU25 | beta glucosidase 25 | chr3:881006-884157
FORWARD LENGTH=1747
Length=1747
Score = 344 bits (186), Expect = 2e-94
Identities = 206/216 (95%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 6 TCAGCCGGCTACTGCGAAGTATCCAGTTTGCGCAGACGGGTTAAGAAAAGTTTTGAAATA 65
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1180 TCAGCCTGCTACTGCGAAGTATCCTGTTTGCGCTGACGGGTTAAGAAAAGTTTTGAAATA 1239
Query 66 CATCAAAGAGAACTATAACGACCCAGAAATCATAGTCACTGGAAATGGGTACAAGGAGAA 125
||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1240 CATCAAAGAGAACTACAATGACCCAGAAATCATAGTCACTGGAAACGGGTACAAGGAGAC 1299
Query 126 ACTTGAAGAGAAAGATGTGCTTCCCCATGCCCTCAGCGATAGTAACAGGAAGTATTATCA 185
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1300 ACTTGAAGAGAAAGATGTACTTCCAGATGCCCTCAGCGATAGTAACAGGAAGTATTATCA 1359
Query 186 TATGAGACATCTCATGGCATTACATGGAGCAGTCTG 221
||||||||||||||||||||||||||||||||||||
Sbjct 1360 TATGAGACATCTCATGGCATTACATGGAGCAGTCTG 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5