BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906782

Length=1269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19200.1 | Symbols:  | unknown protein | chr2:8333200-833473...   379    3e-104


> AT2G19200.1 | Symbols:  | unknown protein | chr2:8333200-8334730 
FORWARD LENGTH=1220
Length=1220

 Score =  379 bits (205),  Expect = 3e-104
 Identities = 276/310 (89%), Gaps = 6/310 (2%)
 Strand=Plus/Plus

Query  952   CTTGACGCCTATGATGCAATTTTCTACATTAGGTACACAGACTCATGCAAGGCTCGGGCT  1011
             |||| ||||| |||||||| ||||||| |||||||||||||||||||| |||||||| ||
Sbjct  755   CTTGGCGCCTGTGATGCAACTTTCTACGTTAGGTACACAGACTCATGCCAGGCTCGGACT  814

Query  1012  GGTGAGGATGTCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGAAGCCGGAAGTC  1071
             |||||||||| ||||||||||||||||||||||||||||||||||||| ||   || |||
Sbjct  815   GGTGAGGATGCCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGCAGTTTGATGTC  874

Query  1072  TTTAGAATCGTGGGTTGCACTGAGAGCT-TCGGATCATTAGGGAACGGTGAATCCACCAC  1130
             || | |||||||||| | |||||||||| | | |||||||||||| ||||||||||||||
Sbjct  875   TTCAAAATCGTGGGTCGTACTGAGAGCTATAG-ATCATTAGGGAATGGTGAATCCACCAC  933

Query  1131  GTCTCGGGAGACAGTTTTGCCTGGCTCGAAGGACATAGATTCGATGGGACAATCTGACAT  1190
             ||| |||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||
Sbjct  934   GTCCCGGGAGACAGTTGTGCATTGCTCGAAGGACATAGATTCGATGGAACAATCTGACAT  993

Query  1191  G-ATG--G-TTTCGACGGACATGGTGGGTCGTACTCAGAGCTCACAAACCTTGGAAGCTG  1246
             | |||  | |||||||||| ||| ||||| |||||||||||| |||||||||||||||||
Sbjct  994   GCATGATGGTTTCGACGGATATGTTGGGTTGTACTCAGAGCTGACAAACCTTGGAAGCTG  1053

Query  1247  GCTCGTCGTC  1256
             |||||| |||
Sbjct  1054  GCTCGTTGTC  1063


 Score =  300 bits (162),  Expect = 3e-80
 Identities = 213/237 (90%), Gaps = 6/237 (3%)
 Strand=Plus/Plus

Query  646  TACCGCATAACTTTCGATGCCAAGGATCCTCGAGATACCAGTGGTTCCCTTCAAACTTTT  705
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  440  TACCGCATAACTTTCGATGCCAAGGATCCTCGAGAGACCAGTGGTTCCCTTCAAACTTTT  499

Query  706  CAAACTCATGTTAATGAAAGAAGTTATGGCAGCTTCCTTTCAACGTGCACTATTGCTTGT  765
            || |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct  500  CATACTCATGTTAATGAAAGAAGTTATGGCAGCTTCCTTTTGACGTGCACTATTGCTTGT  559

Query  766  CCTTTAGGTGAAG-TTACCATAGGTGGTGAAACCAATAGAGTCA-GCTTGCATTCTTTCA  823
            ||||||||||||  ||   | ||||||||||||||| |||  || | |||  |||| |||
Sbjct  560  CCTTTAGGTGAACCTTTT-AGAGGTGGTGAAACCAAAAGAACCATG-TTGGTTTCTCTCA  617

Query  824  TGCCTGAGTTGCCGAC-AGTGAATCCTTTTCAAGATGATACAGACCGATTTTACGTG  879
            | |||||||||||| | || ||||||||| ||||||| |||||||||||||||||||
Sbjct  618  TACCTGAGTTGCCG-CTAGAGAATCCTTTCCAAGATGCTACAGACCGATTTTACGTG  673



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62399277435


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5