BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906784

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19180.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   771    0.0  


> AT2G19180.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G16840.1); 
Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8324716-8325965 
FORWARD LENGTH=864
Length=864

 Score =  771 bits (417),  Expect = 0.0
 Identities = 504/546 (92%), Gaps = 6/546 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTCGATTGCTCTCCAAAACCCTAATTCCCCACGGAAGATTCTTCCTCCGTCGTTTC  60
            ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  27   ATGTCTCGATTGCTCTCAAAAACCCTAATTCCCAACGGAAGATTCCTCCTCCGTCGTTTC  86

Query  61   AACGAGCCAACGATTACGACGACGGCCCCACCAAGCCTCGTCTGTTTCAGCCGCCGCTTT  120
            ||||||||  |||||||||| |     ||||||| | |||||||||||||||||||||||
Sbjct  87   AACGAGCCGGCGATTACGAC-A-----CCACCAAACGTCGTCTGTTTCAGCCGCCGCTTT  140

Query  121  TCATCAATCCCACAAGTCATCGAGCTTGAAATCGATTCTAAAACCGAAGCCGAAGCCGCG  180
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| || 
Sbjct  141  TCATCCATCCCACAAGTCATCGAGCTTGAAATCGATTCTAAAAACGAAGCGGAAGCAGCA  200

Query  181  ATTCTCAAGAAGCTTAACGAATTCGTCCGAAGGATCATCGTTCATAATTCGACTCCAGAT  240
            |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  201  ATTCTCAAAAAGCTAAACGAATTCGTACGAAGGATCATCGTTCATAATTCGACTCCAGAT  260

Query  241  TGGCTACCCTTTGCACCTGGCTCTTCCTTTTGGGTACCACCTCATCAGATTACGGCCACC  300
            ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || 
Sbjct  261  TGGCTTCCTTTTGCACCTGGCTCTTCCTTTTGGGTACCTCCTCATCAGATTACGGCTACA  320

Query  301  AAGATCGCGAATTTGGTCGACAAGGTGACTAATCCGTTGACGGAGGAAGAATCTCTTTCT  360
            |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| 
Sbjct  321  AAGATCGCCAATTTGGTCGATAAGGTGACTAATCCGTTGACGGAGGAAGAGTCTCTTTCG  380

Query  361  CTCTCGTCTCCTTATGGTTGGCCTTGTTCCTCTTTCTTCATTCCTCCTCCAGGTGATTCA  420
            || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| 
Sbjct  381  CTTTCGTCTCCTTATGGTTGGCCTTGTTCCTCTTTCTTCATTCCTCCTCCAGATGGTTCC  440

Query  421  TCATCTACACAAGAGGTAGAAGCTAGCGTGGAGTTGAAAATCCCGGGGAATGAGATGCTG  480
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct  441  TCATCTACACAAGAGGAAGAAGCTAGCGTGGAGTTGAAAATCCCGGGGAATGAGATGTTG  500

Query  481  GAAATCAAGCTAGCACATTATCCAGATCCTATTTACTTTTTTAAACCGGAAGACGGTGAG  540
            ||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| 
Sbjct  501  GAAGTGAAGCTAGCACATTATCCAGATCCTATTTACTCTTTTAAACCTGAAGATGGTGAA  560

Query  541  GAGTGA  546
            ||||||
Sbjct  561  GAGTGA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5