BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906790
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 375 5e-103
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 219 8e-56
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 202 8e-51
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 150 3e-35
AT1G62810.1 | Symbols: | Copper amine oxidase family protein |... 91.6 2e-17
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 375 bits (203), Expect = 5e-103
Identities = 407/502 (81%), Gaps = 27/502 (5%)
Strand=Plus/Plus
Query 445 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACAACTAAACTTTCACATATCACCCTTTTC 504
||| || ||||| ||||||||||||||| ||||||| | ||||||||| ||||
Sbjct 475 GTAGTCATTGTTTCCAATCTCTCTCCCC---TAACTAAAATAGCACATATCAAAGGTTTC 531
Query 505 TTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAAGCAT 564
||||| | ||||| | | |||||||| ||||||||| |||||||||| ||||||||||||
Sbjct 532 TTCAATGGTGTTGCACAAGTTGTTAGCGTTCGACTTGTTGTAAACCACGAGGGTAAGCAT 591
Query 565 GTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAGTGGGCGCTGGAAAAT 624
||||||||||| ||||||||||||||| ||||| || |||||| ||| |||||| |
Sbjct 592 GTGGGCTATGGATTTGTTGAGTTTGCTTCTGCTTACGGAGCAAACAAGGCTCTGGAAGAG 651
Query 625 AAGAATGGTGAATACT-TGCACGATCATAAGATTTTCTTGATGCAAGGACTTGATGGAA- 682
|| ||||||||||| | ||||| ||||||||||| | |||||| |||||| || |||
Sbjct 652 AAAAATGGTGAATA-TCTGCACAATCATAAGATTCTGTTGATGAAAGGAC---AT-GAAT 706
Query 683 CTCCAGATTCTGCTGAGGCAGTTGCCATAAGAAATAAGACACTCTTTGTTACCAATCTCT 742
|||| | || |||||||| || |||||||| || || || ||||||||| ||||||||
Sbjct 707 CTCCTGGTTTTGCTGAGGAAGCTGCCATAA-CAA-AA-ACGCTCTTTGTTGCCAATCTC- 762
Query 743 C-TCCCATAACAACAAAAATATCACATATCATCAATTTCTTCAAAGATGTTGGACAAGTT 801
| | | | | | | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 763 CGTGAC-T--CCATTCAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTT 819
Query 802 GTTCATGTTCGACTTATTGT--AGA-CCAAAGATGCAGGATGGTGGGTTTTGGCTTTGTT 858
|||||||||||||||||||| | | ||| || || || | ||| | || ||||||
Sbjct 820 GTTCATGTTCGACTTATTGTAAACAGCCAGGGA--AAGCAT-GCGGGCTGGGGTTTTGTT 876
Query 859 GAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGAAAAGAAGAAGGGTGAATATTTG 918
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 877 GAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAAC--GG-TGAATATTTG 933
Query 919 CACAATCGCGAGATTGCTCTTG 940
|||||| | ||||| ||||||
Sbjct 934 CACAATTACAAGATTTCTCTTG 955
Score = 191 bits (103), Expect = 2e-47
Identities = 213/264 (81%), Gaps = 15/264 (6%)
Strand=Plus/Plus
Query 1133 TACCAAATATCATCAAGTTATTCAAAGTTGTTGGAGAAGTTGTTCGTGCTGGAGTTATTG 1192
|||||| ||||||||| || |||| | |||||||||| |||||| | | || ||||||
Sbjct 1166 TACCAACTATCATCAATTTCTTCAGTGATGTTGGAGAAATTGTTCATATTCGAATTATTG 1225
Query 1193 TAGACCAC-TGGGGTGAGCATGTGGGCTGTTGCTTTGTTGAGTTTGCTTCTGCTGATGAA 1251
|||||||| | |||||||| |||||||||| ||||||| |||||| |||| | | |||
Sbjct 1226 TAGACCACAT-GGGTGAGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAACGAA 1284
Query 1252 GCAAAGAAGGCGGTGCAAGTGAGGAATGGTTATAAtttttttGTTAACGTGGCTGAGATA 1311
||| |||||||| ||||| || || ||| ||| ||| |||| ||||||||||||||
Sbjct 1285 GCAGAGAAGGCGCTGCAAAAGAAGACTGG---TAAGATTTCTGTTGACGTGGCTGAGATA 1341
Query 1312 GATCGTCCATACCCT-TTCCGACTCAATTACAAGC-TTGC-AGAGAAGCTTTGGTACGAA 1368
| | | |||||||| || ||| ||| ||||| | |||| | |||||||||||||||||
Sbjct 1342 G--C-TTCATACCCTGTT-GGACCCAAGTACAA-CGTTGCTA-AGAAGCTTTGGTACGAA 1395
Query 1369 GACAACCTTCGACGAG-AAGGCTT 1391
|||||||||||||||| || ||||
Sbjct 1396 GACAACCTTCGACGAGGAATGCTT 1419
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 219 bits (118), Expect = 8e-56
Identities = 191/225 (85%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 668 AAGGACTTGATGGAACT-CCAGATTCTGCTGAGGCAGTTGCCATAAGAAATAAGACACTC 726
|||||||||||| |||| ||| ||| || |||||||||||| ||||||| ||||| |||
Sbjct 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTC 525
Query 727 TTTGTTACCAATCTCTCTCCCATAACAACAAAAATATCACATATCATCAATTTCTTCAAA 786
|||||| || ||||||| || | | | |||||||| ||||||||||||||||||||
Sbjct 526 TTTGTTTCCCGTCTCTCT-CC-GGA-AGCTCAAATATCAGATATCATCAATTTCTTCAAA 582
Query 787 GATGTTGGACAAGTTGTTCATGTTCGACTTATTGTAGACCAAA-GATGC-AGGATGGTGG 844
|| |||||||||||||| ||||||||||||||||||||| | | | || || ||| |||
Sbjct 583 GACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGG-GCGAGCATG-TGG 640
Query 845 GTTTTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 889
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685
Score = 195 bits (105), Expect = 1e-48
Identities = 184/220 (84%), Gaps = 14/220 (6%)
Strand=Plus/Plus
Query 445 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACAACTAAACT-TTCACATATCACCCTTTT 503
||||||| |||||||||||||||||||| | ||||||| | || ||| ||| ||
Sbjct 138 GTACTCTATGTTGCCAATCTCTCTCCCC--A-AACTAAAATATT-GCATGTCAAAGAATT 193
Query 504 CTTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAAGCA 563
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 194 CTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA--AG------CA 245
Query 564 TGTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAGTGGGCGCTGGAAAA 623
||||||||||||||||||||| |||||| || || || |||||||| ||||||| ||||
Sbjct 246 TGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAA 305
Query 624 TAAGAATGGTGAATACTTGCACGATCATAAGATTTT-CTT 662
|||||||||||||| ||||| |||||| ||||||| |||
Sbjct 306 GAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTT 345
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 202 bits (109), Expect = 8e-51
Identities = 147/165 (89%), Gaps = 3/165 (2%)
Strand=Plus/Plus
Query 501 TTTCTTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAA 560
||||||||| ||||||||||| ||||||||||||||||||||||||| || ||| ||||
Sbjct 2220 TTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAGCCCCGAGAGTAA 2279
Query 561 GCATGTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAG-TGGGCGCTGG 619
||||||||||||||||||||||||||||||| || || | |||||| ||| ||||||
Sbjct 2280 GCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGG-CGCTGG 2338
Query 620 AAAATAAGAATGGTGAATACTTGCACGATCATAAGATTTT-CTTG 663
|||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 2339 AAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTG 2383
Score = 132 bits (71), Expect = 1e-29
Identities = 170/215 (79%), Gaps = 17/215 (8%)
Strand=Plus/Plus
Query 711 AAGAAATAAGACACTCTTTGTTACCAATCTCTCTCCCATAACAACAAAAATATCACATAT 770
|||||| ||||| |||| |||| | |||| ||| | || || ||||| || ||||
Sbjct 1803 AAGAAAAAAGACGCTCTATGTTTGCTGTCTCCCTCGC--GAC-ACTAAAATGCCAGATAT 1859
Query 771 CATCAATTTCTTCAAAGATGTTGGACAAGTTGTTCA-TGTTCGACTTATTGTAGACCAAA 829
|||| ||||||||||||||||||||||||||||| | ||||| ||||| | | | |||
Sbjct 1860 CATCGATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTACT--A--C-AAA 1913
Query 830 GATGCA--GGAT-G-GTGGGTTT--TGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAG 883
| ||| || | | || || |||||| |||||||||||||||||||||||||||
Sbjct 1914 -ACGCAACGGTTTGCGTTTGTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAA 1972
Query 884 AGAAGGCGCTGGAAAAGAAGAAGGGTGAATATTTG 918
||||||||||||| | |||||| ||||||||||||
Sbjct 1973 AGAAGGCGCTGGATATGAAGAATGGTGAATATTTG 2007
> AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=1272
Length=1272
Score = 150 bits (81), Expect = 3e-35
Identities = 190/238 (80%), Gaps = 26/238 (11%)
Strand=Plus/Plus
Query 1168 GAAGTTGTTCGTGCTGGAGTTATTGTAGACCACTGGGGTGAGCATGTGGGCTGTTGCT-T 1226
||||||||||||| | || ||||||| ||||| | |||| ||||| |||||||| ||| |
Sbjct 961 GAAGTTGTTCGTGTTCGACTTATTGTTGACCAATCGGGTAAGCATATGGGCTGTGGCTAT 1020
Query 1227 TGTTGAGTTTGCTTCTGCTGATGAAGCAAAGAAGGCGGT-G--CA-AGTG-A-GG---AA 1277
| ||||||||||||||||| |||||||| |||||||| | | || || | | || ||
Sbjct 1021 T-TTGAGTTTGCTTCTGCTAATGAAGCAGAGAAGGCGCTGGAACAGAG-GAATGGTAAAA 1078
Query 1278 ---TG-G-T-T-ATAAtttttttGTT-AACGTGGCTGAGATAGATCGTCCATACCCTTTC 1329
|| | | | | || | ||| || | | |||||||||||| | |||||||||| ||
Sbjct 1079 GTTTGCGCTATCACAAAATCTTTCTTGAGC-TGGCTGAGATAG--C-TCCATACCCTCTC 1134
Query 1330 CGACTCAAT-TACAAGCTTGCAGAGAAGCTTTGGTACGAAGACAACCTTCGACGAGAA 1386
| || | || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1135 CAACAC-ATGTACAAGCTTGCAGAGAAGCTTTGGTACGAAGACAACCTTCTACGAGAA 1191
Score = 122 bits (66), Expect = 7e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 853 TTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGAAAAGAAGAAGGGTGAA 912
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 679 TTTGTTGAGTTTGCTTCTGCTAAGGAAGCAGAGAATGCGCTGGAAAAGAAGAAGGGTGAA 738
Query 913 TATTTGCACAATCGCGAGATT 933
|||||||| || ||||||||
Sbjct 739 TATTTGCAGGATGGCGAGATT 759
> AT1G62810.1 | Symbols: | Copper amine oxidase family protein
| chr1:23257726-23261966 REVERSE LENGTH=2860
Length=2860
Score = 91.6 bits (49), Expect = 2e-17
Identities = 170/223 (76%), Gaps = 30/223 (13%)
Strand=Plus/Plus
Query 1166 GAGAAGTTGTTCGTGCTGGAGTTATTGTAGACCACTGGGGTGAGCATGTGGGCTGTTGCT 1225
||||||||||||||| | ||||||||||||| | | ||||| |||||||||||
Sbjct 2506 GAGAAGTTGTTCGTGTTCGAGTTATTGTAGAGC-C-------AGCATACGGGCTGTTGCT 2557
Query 1226 TTGTTGAGTTTGCTTCTGCTGAT-GAAGCAAAGAAGGCGGTGCAAGTGAGGAATGGTTAT 1284
||||||||||||||||| || | |||||| |||||||| || || || ||| ||| |
Sbjct 2558 TTGTTGAGTTTGCTTCT-CTTAACGAAGCAGAGAAGGCGTTGGAAACGAAGAAGGGTGA- 2615
Query 1285 AA-ttttt----t--t--G-TTA------ACGTGGCTGAGATAGATCGTCCATACCCTTT 1328
|| ||||| | | | ||| ||||||||||||| | | |||| |||||||
Sbjct 2616 AACTTTTTACAGTCGTAAGATTATTCTTGACGTGGCTGAGATGG--C-TCCAGACCCTTT 2672
Query 1329 CCGACTCAATTACAAGCTTGCAGAGAAGCTTTGGTACGAAGAC 1371
||||||||| ||||| |||| | |||||||||| ||| |||||
Sbjct 2673 CCGACTCAAGTACAACCTTGTAAAGAAGCTTTGTTACCAAGAC 2715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5