BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906811
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate ... 1989 0.0
> AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate
phytyltransferase 1 | chr2:8207342-8210463 FORWARD LENGTH=1747
Length=1747
Score = 1989 bits (1077), Expect = 0.0
Identities = 1148/1183 (97%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCGCTGCTCTCTAGTTCTTCTCTTGTTTCCGCTGCTGGTGGGTTTTGTTGGAGG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 150 ATGGAGTCTCTGCTCTCTAGTTCTTCTCTTGTTTCCGCTGCTGGTGGGTTTTGTTGGAAG 209
Query 61 AAGCAGAATCTAAAGCTCCAATCTTTATCAGAAATCCGAGTTCTGCGTTGTGATTCGAGT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 210 AAGCAGAATCTAAAGCTCCACTCTTTATCAGAAATCCGAGTTCTGCGTTGTGATTCGAGT 269
Query 121 AAAGTTGTCGCAAAACCGAAGTTTAGGAACAATCTTGTTAGGCTTGATGGTCAAGAATCT 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 270 AAAGTTGTCGCAAAACCGAAGTTTAGGAACAATCTTGTTAGGCCTGATGGTCAAGGATCT 329
Query 181 TCATTGTTGTTGTATCCGAAATATAAGTCGAGATTTCGGGTTAATGCCACTGCGGGTCAG 240
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 330 TCATTGTTGTTGTATCCAAAACATAAGTCGAGATTTCGGGTTAATGCCACTGCGGGTCAG 389
Query 241 CCCGAGGCTTTCGA-TCCGAATAGCAAACATAAGTCTTTTAGAGACTCGTTAGATGCGTT 299
|| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 390 CCTGAGGCTTTCGACTC-GAATAGCAAACAGAAGTCTTTTAGAGACTCGTTAGATGCGTT 448
Query 300 TTACAGGTTTTCTAGGCCTCATACAGTTATCGGCACAGTGCTTAGCATTTTATCTGTATC 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 449 TTACAGGTTTTCTAGGCCTCATACAGTTATTGGCACAGTGCTTAGCATTTTATCTGTATC 508
Query 360 TTTCTTAGCAGTAGAGAAGGTTTCTGATATATCTCCATTACTTTTTACTGGCATCTTGGA 419
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 509 TTTCTTAGCAGTAGAGAAGGTTTCTGATATATCTCCTTTACTTTTCACTGGCATCTTGGA 568
Query 420 GGCTGTTGTTGCAGCTCTCATGATGAACATATACATAGTTGGGCTAAATCAGCTGTCTGA 479
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 569 GGCTGTTGTTGCAGCTCTCATGATGAACATTTACATAGTTGGGCTAAATCAGTTGTCTGA 628
Query 480 TGTTGAAATAGATAAGGTCAACAAGCCATATCTTCCATTGGCATCAGGGGAATATTCTGT 539
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 629 TGTTGAAATAGATAAGGTTAACAAGCCCTATCTTCCATTGGCATCAGGAGAATATTCTGT 688
Query 540 TAACACCGGCATTGCAATAGTAGCTTCCTTCTCCATCATGAGTTTCTGGCTCGGGTGGAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 689 TAACACCGGCATTGCAATAGTAGCTTCCTTCTCCATCATGAGTTTCTGGCTTGGGTGGAT 748
Query 600 TGTTGGTTCATGGCCATTGTTCTGGGCTCTTTTCGTGAGTTTCATGCTCGGTACTGCATA 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 749 TGTTGGTTCATGGCCATTGTTCTGGGCTCTTTTTGTGAGTTTCATGCTCGGTACTGCATA 808
Query 660 CTCTATCAATTTGCCACTTTTACGGTGGAAAAGATTTGCATTGGTTGCAGCAATTTGTAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 809 CTCTATCAATTTGCCACTTTTACGGTGGAAAAGATTTGCATTGGTTGCAGCAATGTGTAT 868
Query 720 CCTCGCTGTCCGAGCTATTATTGTTCAAATCGCCTTTTATCTCCATATTCAGACCCATGT 779
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 869 CCTCGCTGTCCGAGCTATTATTGTTCAAATCGCCTTTTATCTACATATTCAGACACATGT 928
Query 780 GTTTGGAAGACCAATCTTGTTCACGAGGCCTCTTATTTTCGCCACTGCGTTTATGAGCTT 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 929 GTTTGGAAGACCAATCTTGTTCACTAGGCCTCTTATTTTCGCCACTGCGTTTATGAGCTT 988
Query 840 TTTCTCTGTCGTTATCGCATTGTTTAAGGATATACCTGATATTGAAGGGGATAAGATATT 899
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 989 TTTCTCTGTCGTTATTGCATTGTTTAAGGATATACCTGATATCGAAGGGGATAAGATATT 1048
Query 900 CGGGATCCGGTCATTCTCTGTAACTCTGGGTCAGAAACGGGTGTTTTGGACATGTATTTC 959
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1049 CGGAATCCGATCATTCTCTGTAACTCTGGGTCAGAAACGGGTGTTTTGGACATGTGTTAC 1108
Query 960 ACTACTTCAAATGGCTTACGCTGTTGCGATTCTTGTTGGAGCCACATCTCCATTCATATG 1019
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1109 ACTACTTCAAATGGCTTACGCTGTTGCAATTCTAGTTGGAGCCACATCTCCATTCATATG 1168
Query 1020 GAGCAAAGTCATCTCGGTTGTGGGTCATGTTATACTCGCAACAACTTTGTGGACTCGAGC 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1169 GAGCAAAGTCATCTCGGTTGTGGGTCATGTTATACTCGCAACAACTTTGTGGGCTCGAGC 1228
Query 1080 TAAGTCCGTTGATCTGAGTAGCAAAACCGAAATAACTTCATGTTATATGTTCATTTGGAA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1229 TAAGTCCGTTGATCTGAGTAGCAAAACCGAAATAACTTCATGTTATATGTTCATATGGAA 1288
Query 1140 GCTCTTTTATGCAGAGTACTTGCTGTTACCTTTTTTGAAGTGA 1182
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 GCTCTTTTATGCAGAGTACTTGCTGTTACCTTTTTTGAAGTGA 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5