BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906819 Length=669 Score E Sequences producing significant alignments: (Bits) Value AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28... 514 4e-145 > AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394 REVERSE LENGTH=1347 Length=1347 Score = 514 bits (278), Expect = 4e-145 Identities = 317/336 (94%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 281 GACCA-TTCACCAAGAAATTTGCTGCTCAGTTAGCTGAGAACAATCCCCAAATTCACAAG 339 ||||| || || | ||||||||||||||| |||||||||||||||| |||||| |||||| Sbjct 281 GACCAGTT-ACTAGGAAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAG 339 Query 340 GAGGAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCATAACAGAT 399 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 340 GAGGAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGAT 399 Query 400 GTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAA 459 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 400 GTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAA 459 Query 460 GAGATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTA 519 ||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||| Sbjct 460 GAGATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTA 519 Query 520 GAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGCTGTAGTTGAA 579 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 520 GAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAA 579 Query 580 TACATTGATGACATATATTGCTTCTACAAGAAAAAT 615 |||||| ||||||||||||||||||||||||||||| Sbjct 580 TACATTAATGACATATATTGCTTCTACAAGAAAAAT 615 Score = 154 bits (83), Expect = 1e-36 Identities = 113/127 (89%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 171 TTTACCTGGAGGAAAGGTAATTCCAACGAATAGACAGACAAGAAGAGCACTGAGTAATAT 230 ||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct 114 TTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAATAT 173 Query 231 AAACAAGAACATCAGCAGAGCTCCTGTTTATCCTTCTGCTGTCAACAAGAGACCATTCAC 290 |||||||||||||| | ||||||| || ||||||| ||||||||| |||||||||||| Sbjct 174 AAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGTCAA---GAGACCATTCAC 230 Query 291 CAAGAAA 297 ||||| Sbjct 231 TGAGAAA 237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32350790668 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5