BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906819

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28...   514    4e-145


> AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394 
REVERSE LENGTH=1347
Length=1347

 Score =  514 bits (278),  Expect = 4e-145
 Identities = 317/336 (94%), Gaps = 2/336 (1%)
 Strand=Plus/Plus

Query  281  GACCA-TTCACCAAGAAATTTGCTGCTCAGTTAGCTGAGAACAATCCCCAAATTCACAAG  339
            ||||| || || | ||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct  281  GACCAGTT-ACTAGGAAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAG  339

Query  340  GAGGAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCATAACAGAT  399
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  340  GAGGAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGAT  399

Query  400  GTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAA  459
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  400  GTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAA  459

Query  460  GAGATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTA  519
            |||||||||  ||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct  460  GAGATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTA  519

Query  520  GAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGCTGTAGTTGAA  579
            ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  520  GAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAA  579

Query  580  TACATTGATGACATATATTGCTTCTACAAGAAAAAT  615
            |||||| |||||||||||||||||||||||||||||
Sbjct  580  TACATTAATGACATATATTGCTTCTACAAGAAAAAT  615


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 113/127 (89%), Gaps = 3/127 (2%)
 Strand=Plus/Plus

Query  171  TTTACCTGGAGGAAAGGTAATTCCAACGAATAGACAGACAAGAAGAGCACTGAGTAATAT  230
            ||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct  114  TTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAATAT  173

Query  231  AAACAAGAACATCAGCAGAGCTCCTGTTTATCCTTCTGCTGTCAACAAGAGACCATTCAC  290
            |||||||||||||| | ||||||| || ||||||| |||||||||   ||||||||||||
Sbjct  174  AAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGTCAA---GAGACCATTCAC  230

Query  291  CAAGAAA  297
              |||||
Sbjct  231  TGAGAAA  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32350790668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5