BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906820
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18870.1 | Symbols: VEL3 | vernalization5/VIN3-like | chr2:8... 728 0.0
> AT2G18870.1 | Symbols: VEL3 | vernalization5/VIN3-like | chr2:8167471-8168668
FORWARD LENGTH=720
Length=720
Score = 728 bits (394), Expect = 0.0
Identities = 539/606 (89%), Gaps = 22/606 (4%)
Strand=Plus/Plus
Query 1 GCTGCAAGTAACTCAAATTTGAGTGATGATAAAAAGAAAGGAAGGAAAAACCCTAAGCCT 60
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 97 GCTGCAAGTAACTCTAATTTGAGTGATGATAAAAAGAAACGAAGGAAAAACCCTAAGCCT 156
Query 61 CGTCATTTAAGTTCCTATGGGAAGCCTAATAATACCTCACCAGTTCAACCTTC---AACA 117
|| || |||||||| |||||||||| |||||| | || ||||||||||| || |||
Sbjct 157 CGGCACTTAAGTTCGTATGGGAAGCGTAATAACA-CT--CCAGTTCAACCCTCAGAAACT 213
Query 118 GAAACCAAGAGCGAAGGCAAAAGAGTTTGCTTCAA-AACCGATGCTGACGTAAGACAGAT 176
|||||||||||| |||||||||||||||||||||| || | | |||| |||||||||||
Sbjct 214 GAAACCAAGAGCCAAGGCAAAAGAGTTTGCTTCAACAA-C--T-CTGATGTAAGACAGAT 269
Query 177 GAAGCAAAACACTTCTTCTTCTAGAGAAAATCAG-TTGATCATAAAAGAAACTGTCATGG 235
||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 270 GAAGCAAAACA---CTTCTTCTAGAGAAAATCAGTTTG-GCATAAAAGAAACTGTCTTGG 325
Query 236 AGAATTTGCCC-ACTGTCACAACTCAATTTAGGTCAGACCAAATCAATGACCGTCAAGTT 294
||||||| ||| || ||||| |||| |||| ||||||||||||||||| || ||||| |
Sbjct 326 AGAATTTCCCCAAC-GTCACTCCTCAGTTTATGTCAGACCAAATCAATGGCCATCAAGAT 384
Query 295 AAACCTGAGAAGTCGAAGAAGAATGCGGAAAGTTATTGTTTAGGGTTTGAGCAATGTGTG 354
|||||||||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||
Sbjct 385 AAACCTGAGAAGGCGAAGAAGAATCCGGAAAGCTATGGTTTAGGGCTTGAGCAATGTGTG 444
Query 355 AAGATCATAAGACAGCTTGAGTGTTCAGGTAATGTTGAGAGCAGTTTTAGACAAAAGTTT 414
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 445 AAGATCATAAGAAAGCTTGAGTGTTCAGGTTATGTTGAGAGCACTTTTAGACAAAAGTTT 504
Query 415 TTGACTTGGTTTAGCCTAAGAGCGAC-AGCTCAGGAGATCAATACTGTCAAGACATTCAT 473
|||||||||||||||||| |||| || || |||||||| |||||||||| |||||||||
Sbjct 505 TTGACTTGGTTTAGCCTACGAGCTACGAG-TCAGGAGAGAAATACTGTCACGACATTCAT 563
Query 474 -ACATGCTTTCAAGGATGATTCAACGGCTCTGGCTGAACAGCTCGTTGACACATTCTCTG 532
| |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 564 GA-ATGCTTTCAATGATGATTCAATGGCTCTGGCTGAGCAGCTCGTTGACACATTCTCTG 622
Query 533 ATTGCATATGGAGAAAGGGTCCTGCGATTGGCGATGGCGATGGAGGTGGCAGTAACGGTA 592
|||| |||||||| |||||| ||| |||||||||| |||||||||||||||||| |||
Sbjct 623 ATTGTATATGGAGCAAGGGTTCTGTGATTGGCGATCGCGATGGAGGTGGCAGTAGTGGTG 682
Query 593 TCTCAT 598
||||||
Sbjct 683 TCTCAT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5