BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906820 Length=600 Score E Sequences producing significant alignments: (Bits) Value AT2G18870.1 | Symbols: VEL3 | vernalization5/VIN3-like | chr2:8... 728 0.0 > AT2G18870.1 | Symbols: VEL3 | vernalization5/VIN3-like | chr2:8167471-8168668 FORWARD LENGTH=720 Length=720 Score = 728 bits (394), Expect = 0.0 Identities = 539/606 (89%), Gaps = 22/606 (4%) Strand=Plus/Plus Query 1 GCTGCAAGTAACTCAAATTTGAGTGATGATAAAAAGAAAGGAAGGAAAAACCCTAAGCCT 60 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 97 GCTGCAAGTAACTCTAATTTGAGTGATGATAAAAAGAAACGAAGGAAAAACCCTAAGCCT 156 Query 61 CGTCATTTAAGTTCCTATGGGAAGCCTAATAATACCTCACCAGTTCAACCTTC---AACA 117 || || |||||||| |||||||||| |||||| | || ||||||||||| || ||| Sbjct 157 CGGCACTTAAGTTCGTATGGGAAGCGTAATAACA-CT--CCAGTTCAACCCTCAGAAACT 213 Query 118 GAAACCAAGAGCGAAGGCAAAAGAGTTTGCTTCAA-AACCGATGCTGACGTAAGACAGAT 176 |||||||||||| |||||||||||||||||||||| || | | |||| ||||||||||| Sbjct 214 GAAACCAAGAGCCAAGGCAAAAGAGTTTGCTTCAACAA-C--T-CTGATGTAAGACAGAT 269 Query 177 GAAGCAAAACACTTCTTCTTCTAGAGAAAATCAG-TTGATCATAAAAGAAACTGTCATGG 235 ||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||| Sbjct 270 GAAGCAAAACA---CTTCTTCTAGAGAAAATCAGTTTG-GCATAAAAGAAACTGTCTTGG 325 Query 236 AGAATTTGCCC-ACTGTCACAACTCAATTTAGGTCAGACCAAATCAATGACCGTCAAGTT 294 ||||||| ||| || ||||| |||| |||| ||||||||||||||||| || ||||| | Sbjct 326 AGAATTTCCCCAAC-GTCACTCCTCAGTTTATGTCAGACCAAATCAATGGCCATCAAGAT 384 Query 295 AAACCTGAGAAGTCGAAGAAGAATGCGGAAAGTTATTGTTTAGGGTTTGAGCAATGTGTG 354 |||||||||||| ||||||||||| ||||||| ||| |||||||| |||||||||||||| Sbjct 385 AAACCTGAGAAGGCGAAGAAGAATCCGGAAAGCTATGGTTTAGGGCTTGAGCAATGTGTG 444 Query 355 AAGATCATAAGACAGCTTGAGTGTTCAGGTAATGTTGAGAGCAGTTTTAGACAAAAGTTT 414 |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 445 AAGATCATAAGAAAGCTTGAGTGTTCAGGTTATGTTGAGAGCACTTTTAGACAAAAGTTT 504 Query 415 TTGACTTGGTTTAGCCTAAGAGCGAC-AGCTCAGGAGATCAATACTGTCAAGACATTCAT 473 |||||||||||||||||| |||| || || |||||||| |||||||||| ||||||||| Sbjct 505 TTGACTTGGTTTAGCCTACGAGCTACGAG-TCAGGAGAGAAATACTGTCACGACATTCAT 563 Query 474 -ACATGCTTTCAAGGATGATTCAACGGCTCTGGCTGAACAGCTCGTTGACACATTCTCTG 532 | |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 564 GA-ATGCTTTCAATGATGATTCAATGGCTCTGGCTGAGCAGCTCGTTGACACATTCTCTG 622 Query 533 ATTGCATATGGAGAAAGGGTCCTGCGATTGGCGATGGCGATGGAGGTGGCAGTAACGGTA 592 |||| |||||||| |||||| ||| |||||||||| |||||||||||||||||| ||| Sbjct 623 ATTGTATATGGAGCAAGGGTTCTGTGATTGGCGATCGCGATGGAGGTGGCAGTAGTGGTG 682 Query 593 TCTCAT 598 |||||| Sbjct 683 TCTCAT 688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28884634525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5