BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906822
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18860.1 | Symbols: | Syntaxin/t-SNARE family protein | chr... 1101 0.0
AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr... 272 4e-72
> AT2G18860.1 | Symbols: | Syntaxin/t-SNARE family protein | chr2:8164241-8165974
FORWARD LENGTH=1332
Length=1332
Score = 1101 bits (596), Expect = 0.0
Identities = 812/908 (89%), Gaps = 47/908 (5%)
Strand=Plus/Plus
Query 1 ATGATGGTAGTGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATGATGGTAGTGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGAA 177
Query 61 GAGGTTCAAAAATCTGCAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAAG 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAGGTTCAAAAATCTACAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAAG 237
Query 121 AAAGATGAGATCTGTAAAGAACTTCAAGCAGCTTTAGGTACAGCTAAATGGCAGTTGGAG 180
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGATGAGATTTGTAAGGAACTTCAAGCAGCTTTAGGTACAGCTAAATGGCAGTTGGAG 297
Query 181 GAGTTTGTGAAGGCTGTAAGATTGAGTCATAAACGTTGTGGGGGTGATGATTCTTCATCG 240
||||||| |||||| || ||||||||||||||||| ||||||| | |||||||||||||
Sbjct 298 GAGTTTGAGAAGGCAGTGAGATTGAGTCATAAACGGTGTGGGGATAATGATTCTTCATCC 357
Query 241 ACACGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTCATCGCGTAGAAACTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACACGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTCATCGCGTAGAAACTTCT 417
Query 301 CTGCAAGAGGCTTATAGTGAGAATGG-AAAAGAGCCTCTCCGTTGGGTTGATCTTAATGA 359
|||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 418 CTGCAAGAAGCTTATAGTGAAAATGGGAAAA-AGCCTCTCCGTTGGGTTGATCTTAATGA 476
Query 360 AGAAGAGCGTGATGACTTGGCCATGTTTCTCTCTGGATCTTCTCCAACTTCAGAGAGTTT 419
|||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||
Sbjct 477 AGAAGAGCGTGATGACTTAGCAATGTTTCTCTCTGGATCTTCTCGAACTTCACAGAGTTT 536
Query 420 TAGTGGTGAGAGCAGCATTGAGTCGAGAGATTCTACTAATAGTTCCCTAGTTGAAAATC- 478
|||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
Sbjct 537 TAGTGGTGAGAGCAGCATCAAGTCGAGAGAGTCTACTAATAGTTCTCTAGTTGAAAA-CG 595
Query 479 TTCCAGGGAAGAA-CAGAATGGAAGTAAACTGTAAAAAAGAGACATTCAAGAAAG-TGAA 536
|| | ||||| ||| | || | |||| |||||||||||| | ||
Sbjct 596 TT--ATGGAAGTTTCAGC-T--AA--A----GTAA--------CATTCAAGAAAGCT-AA 635
Query 537 AGGTTGCGGTAATGGCTCTGAATGTGTTATAGATATTAAAGAAAGAGTAACACCGGGAAA 596
|| || ||| |||||||||| ||||| ||||| ||| |||||||||| ||||| ||
Sbjct 636 AGTTTATGGTGATGGCTCTGAGTGTGTCATAGACATTGAAGAAAGAGTGACACCTGG--- 692
Query 597 TGCAGATGCGAGGATTCGCCAAGTAGAGAAATCAGCTGGGATGAGAAGAATATGGAGTTC 656
| | | | || | | ||| || |||| |||| |||||||||||||||||||
Sbjct 693 --C-----C-A--A---GC-A-G-AGA-AA-TCAGTTGGGCTGAGAAGAATATGGAGTTC 734
Query 657 ACCAAATTTCAATTCTTTGAGGATTATAGTTCCTGGTGGTGATAATCAAGAAGAAAAGGA 716
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 735 ACCAAATTTCAATTCTTTGAGAATTATAGTTCCTGGTGGTGATAATGAAGAAGAAAAGGA 794
Query 717 GACATTGGTGGCACAAATCGAAGCGACGCCTAAAGTGAAAGGAACTAAGTCTGTATTGTG 776
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 795 GACATTGGTGGCACAAATAGAAGCGACGCCTAAAGTTAAAGGAACTAAGTCTGTATTGTG 854
Query 777 GATGCAGAGACTTCCTGATCATAATCAGCTCTTTGACAAGACCGGTTGCTTCCAAAATCC 836
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 855 GATGCAGAGACTTCCTGATCATAATCAGCTCTTTGACAAGACCGGTTGCTTTCAAAATCC 914
Query 837 GACACGCTTACCATTTAATCACCCGATCAAGCTCACTGTTTCCGTAATGCTAATGGTGTT 896
|| ||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||
Sbjct 915 GATACGCTTACCGTTTAATCACCCGATCAAGTTTATTGTTTCCTTATTGCTAATGGTGTT 974
Query 897 TCTTCTAT 904
||| ||||
Sbjct 975 TCTACTAT 982
> AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr4:14807919-14809985
REVERSE LENGTH=1497
Length=1497
Score = 272 bits (147), Expect = 4e-72
Identities = 356/450 (79%), Gaps = 41/450 (9%)
Strand=Plus/Plus
Query 1 ATGATGGTAGTGAACAGCTTT-GATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGA 59
|||||||||| ||| || ||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 241 ATGATGGTAGCGAATAG-TTTCGATCTATGGCAAAAGGATGTTTTTTTCTCTGCAGCTGA 299
Query 60 AGAGGTTCAAAAATCTGCAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAA 119
||||||||| ||||||| ||||||||||| ||||| ||||| |||||| ||| ||||||
Sbjct 300 GGAGGTTCAAGAATCTGCTGATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAGAGAA 359
Query 120 GA-A-A-GAT-GAG-ATCTGT--AA--AGA--A-CT-T-C-AAG-----C-AGCT--TTA 156
|| | | | | ||| ||| || || ||| | || | | ||| | |||| ||
Sbjct 360 GAGAGACGGTCGAGTATCCGTAGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTT 419
Query 157 G-GTACAGCTAAATGGCAGTTGGAGGAGTTTGTGAAGGCTGTAAGATTGAGTCAT--AAA 213
| | || ||||||||||||||||| ||||||| || ||| || || || || ||| |||
Sbjct 420 GAGCACTGCTAAATGGCAGTTGGAAGAGTTTGAGAGGGCAGTGAGCTTAAGCCATGGAAA 479
Query 214 CGTTGTGGGGGTGATGATTCTTCATCGAC-ACGGCATAAACAGTTTGTTACCGCTATTGA 272
|||| | ||||| || | | || | ||||||||||||||||||||||||||||
Sbjct 480 --TTGT---CGAGATGACACTACCTTAACTA-GGCATAAACAGTTTGTTACCGCTATTGA 533
Query 273 AAACCAGATTCATCGCGTAGAAACTTCTCTGCAAGAGGC-TTATAGTGAGAATGGAAAAG 331
|||||||||| ||| || ||| || |||||| |||| | ||| || |||||||| |||
Sbjct 534 AAACCAGATTTATCAAGTGGAATCTACTCTGCTAGAGTCGTTA-AGCGAGAATGGGAAAC 592
Query 332 AGCCTCTCCGTTGGGTTGATCTTAATGAAGAAGAGCGTGATGA-CTTGGCCATGTTTCTC 390
| ||| | |||||||| |||||||| |||||||||||||||| || | ||||||||||
Sbjct 593 AACCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGATGATCTCG-CCATGTTTCTA 651
Query 391 TCTGGATCTTCTCCA-ACTTCAGAGAGTTT 419
||||||||||||| | || |||||||||||
Sbjct 652 TCTGGATCTTCTC-AGACGTCAGAGAGTTT 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5