BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906834

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich pr...   150    3e-36


> AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich 
protein 2B | chr2:9036793-9037650 REVERSE LENGTH=858
Length=858

 Score =  150 bits (81),  Expect = 3e-36
 Identities = 131/155 (85%), Gaps = 3/155 (2%)
 Strand=Plus/Plus

Query  14   GTGGTGACGATCTCTTCGTTCACCAGTC--C-ATTAGCTCTGAAAAATTTCGTAGCCTTG  70
            ||||||||||||||||||||||||||||  | || || ||||||  |||||||||||| |
Sbjct  169  GTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAAGGATTTCGTAGCCTCG  228

Query  71   CCGTTGATGAAGCTGTTGAGTTCAAGGTTGAGGTTGACAACGCCAGTCGTCTGAAGACTG  130
            | | ||| ||| ||||||||||| | ||||||||||||||| || | ||||  ||| || 
Sbjct  229  CAGCTGAGGAATCTGTTGAGTTCGACGTTGAGGTTGACAACTCCGGCCGTCCCAAGGCTA  288

Query  131  TTGAAGTTTCTGGACCCGAGGGTGCTCCTGTTCAG  165
            ||||||| ||||||||||| |||||||| ||||||
Sbjct  289  TTGAAGTGTCTGGACCCGACGGTGCTCCCGTTCAG  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7293695895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5