BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906841
Length=2910
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20320.1 | Symbols: | DENN (AEX-3) domain-containing protei... 1736 0.0
> AT2G20320.1 | Symbols: | DENN (AEX-3) domain-containing protein
| chr2:8766739-8772591 FORWARD LENGTH=3506
Length=3506
Score = 1736 bits (940), Expect = 0.0
Identities = 1015/1052 (96%), Gaps = 2/1052 (0%)
Strand=Plus/Plus
Query 1250 AGGTAGCAGATGATGCGACATTGTATGGTGTTTGCTTACATGTCTCGGAGATTGTTCAGC 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 AGGTAGCAGATGATGCGACATTGTATGGTGTTTGCTTACATGTCTCGGAGATTGTTCAGA 1543
Query 1310 GACCCCCTGGTGTATTAAGCACTGCATCACCCTTGCATTCATCTGGAGGAGGCAGTCGTT 1369
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1544 GACCCCCTGGTGTATTAAGCACTGCGTCACCCTTGCATTCATCTGGAGGAGGCAGTCGTT 1603
Query 1370 TTTTGGTTTCCGCACCTCGATGTTACTGCTTGCTGACCAGAGTCCCtttttttGAACTAC 1429
|||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1604 TTTTGGTTTCTGCACCTCGATGCTACTGCTTGTTGACCAGAGTCCCTTTTTTTGAACTAC 1663
Query 1430 ACTTTGAGATGTTAAACAGTATGATTGCACAGGAGCGTCTAAAACGCATAACCGAATTTG 1489
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1664 ACTTTGAGATGTTAAACAGTATGATTGCACAAGAGCGTCTAAAACGAATAACCGAATTTG 1723
Query 1490 TTAGTGAGATGTCTCTTGCTGCTGCATGCTATCGTCCATCAATATCCAGGACGAATGATC 1549
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1724 TTAGTGAGATGTCTCTTGCTGCTGCATGCTATCTTCCATCAATATCCAGGAGGAATGATC 1783
Query 1550 AAATTGATAGCCGTGTTTCATCACCTCGTAGCAACCCTGATGATTGGATGGCTTCTGCAA 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 AAATTGATAGCCGTGTTTCATCACCTCGTAGCAACCCTGATGATTGGATGGCTTCTGCAA 1843
Query 1610 TACCTGTTGATGGAGTCATGGCACTTACAGCCGCAGCTGCGGGATTGATCACTGATAGTG 1669
||||||||||||||||||||||||| || ||||||||||| ||| |||| || |||||||
Sbjct 1844 TACCTGTTGATGGAGTCATGGCACTCACTGCCGCAGCTGCAGGACTGATAACGGATAGTG 1903
Query 1670 ACATTGCGAATTTTGCAGAACCTCAATCTCCAGATAGTGTTGTCACCAGCGATACTTCAG 1729
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1904 ACATTGCGAATTTTGCAGAACCTCAATCTCCAGATAGTGTTGTCACCAGTGATACTTCAG 1963
Query 1730 ATGTAAGCCAGATCAAGGAAATAGAAAGAGACGGGAGAAAAGTTTTCCATTGTTACGATG 1789
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1964 ATGTTAGCCAGATCAAGGAAATAGAAAGAGACGGAAGAAAAGTTTTCCATTGTTACGATG 2023
Query 1790 AAAATTCTCCTGAAGTATTTGAGAACCACTTGGATACCCCCGAAAGAACGTCCCAGTGCT 1849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2024 AAAATTCTCCTGAAGTATTTGAGAACCACTTGGATACCCCCGAAAGAACGTCCCAGAGCT 2083
Query 1850 ATGACAATGGCCACACTTCTCCAGAGGTTACATATGCTGATCCTAGGACCCAACCGATAG 1909
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2084 ATGACAATGGCCACACTTCTCCAGAGGTTACATGTTCTGATCCTAGGACCCAACCGATAG 2143
Query 1910 AGCGTAATGAAAGCTGTGAGTCTGTGTTCAGTTCAGCTAGAAGTGTGTTGTCAGATGA-G 1968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2144 AGCGTAATGAAAGCTGTGAGTCTGTGTTCAGTTCAGCTAGAAGTGTGTTGTCAGATGATG 2203
Query 1969 ATTGATGATTTATCAAATAGTGAAAATGATTTCGGAGATGATTTAATACTGGAATGGGCT 2028
||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2204 -TTGATGAATTATCGAATAGCGAAAATGATTTTGGAGATGATTTAATACTGGAATGGGCT 2262
Query 2029 AAGGACCACAACAATGATTCGTTACAATTAGTTTGCGGCTACCATTCATTGGCAATTCCT 2088
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2263 AAAGACCACAACAATGATTCCTTACAATTAGTTTGCGGCTACCATTCATTGGCAATTCCT 2322
Query 2089 CCCCGTGGAAGTGAAGTTGTTTTCCACCCCCTGGAACATTTACAATCAATCGCGTATACC 2148
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2323 TCCCGTGGAAGTGAAGTAGTTTTCCACCCCCTGGAACATTTACAATCAATCTCGTATACC 2382
Query 2149 CGCCCTCCAGTTTCAGCTCTAGGATTGTCAGAAGAATATATTTGCTCTTCTGATTCTTCC 2208
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2383 CGTCCTCCAGTTTCAGCTCTAGGATTGTCAGAAGAATATATTTGCTCTTCTGATTCTAAA 2442
Query 2209 GAGATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACG 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GAGATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACG 2502
Query 2269 GCAACAGTTTGTCGTATTCTCTCTCTTGAAAC 2300
||||||||||||||||||||||| ||||||||
Sbjct 2503 GCAACAGTTTGTCGTATTCTCTCACTTGAAAC 2534
Score = 1358 bits (735), Expect = 0.0
Identities = 897/971 (92%), Gaps = 27/971 (3%)
Strand=Plus/Plus
Query 269 ATGAAGAATCTGGTTCAGGTTCACCCGAGAGGGATGACAATACTCTTAGTAGAGAGATTA 328
|||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 527 ATGAAGAATCTGCTTCAGGTTCACCAGAGAGGGATGACATTACTCTTAGTAAAGAGATTA 586
Query 329 AAGAACTGGATACACAAGTGGTAAATGGTCAAGCT-AAAGCAGATTGTGAA---AATAGG 384
|||||||||||||||||||||||||||||| | || || | || || ||| || |
Sbjct 587 AAGAACTGGATACACAAGTGGTAAATGGTC-ATCTGAAGGTAG-GTG-GAACCGAAGA-A 642
Query 385 GATGAGAACAG-ATTGTTGGAAAAGGATGGTGAAGATA---TTTCG-A-A-TTTGGTGCA 437
||| | | ||| | || | | | | ||| ||||| ||| | | | | ||| || |
Sbjct 643 GAT-ACAGCAGCA-TG-T-G-ATA-GAT-GTGAAAATAGGGATGAGAACAGATTGTTGGA 695
Query 438 TAGGGAA-A---CAGATGATGAACCGCAGAGTCCAAGATGCGAGACACAAGTTAATGACA 493
| ||| | |||| |||||| ||||||||||||||||||||||||||||||| | |
Sbjct 696 -AAAGAACAGTGAAGATAATGAACTGCAGAGTCCAAGATGCGAGACACAAGTTAATAATA 754
Query 494 CATGTATCAGAAAGATGGAAATGAGAGAAGTTACAGGAGAGCAAGACTCTTCGCCATGTA 553
|| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 755 CAAGTATTAGAAAGATGGAAATGAGAGAAGTTATAGGAGAGCAAGACTCTTCGCCATGTA 814
Query 554 CTGCAGATGCAGTTAAAGCAGCTGGAGAGACATATCAAAACGTATACTTCAATGGACCAG 613
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGCGGATGCAGTTAAAGTAGCTGGAGAGACATATCAAAACGTATACTTCAATGGACCAG 874
Query 614 TCTTACCGCAGTCACCGACACAAGGACATAGGCGCACCCAAAGTGAGATAGGGACTCCTG 673
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TCTTACCGCAGTCACCTACACAAGGACATAGGCGCACCCAAAGTGAGATAGGGACTCCTG 934
Query 674 GACACAGACGCACAAACAGTTTCCAGAGATTGAAAACACAGATGCAAAAGGCTTGGCGTG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GACACAGACGCACAAACAGTTTCCAGAGATTGAAAACACAGATGCAAAAGGCTTGGCGTG 994
Query 734 GGGTCAGCAATCTGCGTGAGGATAACCGGCCCACTTTCAATCCTGAGGTCTTAGCAAACC 793
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GTGTCAGCAATCTGCGTGAGGATAACCGGCCCACTTTCAATCCTGAGGTCTTAGCAAACC 1054
Query 794 AAAAAAGACAGTGGTACCAGCTCCACTCTTCAAAAGCTCTGGATCAAACAAAATTAAAGG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1055 AAAAAAGACAGTGGTACCAGCTCCACTCTTCAAAAGCTCTGGATCAAACAAAATTGAAGG 1114
Query 854 AGCCAACATCACTATTTGAACATTTTATCATTGTGGGGCTTCATCCGGAAACGAATTTGA 913
||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1115 AGCCAGCGTCACTGTTTGAACATTTTATCATCGTGGGGCTTCATCCGGAAACGAATTTGA 1174
Query 914 GGCCAGTGGAAGAGGCTTTCCGTAGAAGAAAGAAATGGGAGATGGAGATGTCAAGGTATG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GGCCAGTGGAAGAGGCTTTCCGTAGAAGAAAGAAATGGGAGATGGAGATGTCAAGGTATG 1234
Query 974 AAGTGGCAGACTACAGAATACTCCGTCACCGTGGGCCTCAATTTCCAATATTAGAGCCAC 1033
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1235 AAGTGGCAGATTACAGAATACTCCGTCACCGTGGGCCTCAATTTCCTATATTGGAGCCAC 1294
Query 1034 AGATTCTTTTTAAATACCCTCCTGGAAAGAAGGTGGCAATGCGTCCAAAGGATCTAGCAA 1093
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1295 AGATTCTTTTTAAATACCCTCCCGGAAAGAAGGTAGCAATGCGTCCAAAGGATCTAGCAA 1354
Query 1094 CTTTCTGCTTTCCTGGTGGTGTCAAGGCACGACTTTTGGAGAGGACCCCATCTCTCAGTG 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CTTTCTGCTTTCCTGGTGGTGTCAAGGCACGACTTTTGGAGAGGACCCCATCTCTCAGTG 1414
Query 1154 ATCTAAATGAGCTTGTGTATGGACAGGAACATTTAGGCACAGATGATTCATCGTTCATAT 1213
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1415 ATCTAAATGAGCTTGTGTATGGACAGGAACATTTAGGCACTGATGATTCGTCATTCATAT 1474
Query 1214 TTTCGTTCAAG 1224
|||||||||||
Sbjct 1475 TTTCGTTCAAG 1485
Score = 510 bits (276), Expect = 2e-143
Identities = 296/306 (97%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 2431 AAAATATGTAACATGCCAGCATTGCCTCAGTGTAGAGAACTTATGGCTCAGTTGGCTCCA 2490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2806 AAAATATGTAACATGCCAGCATTGCCTCAGTGTAGAGAACTTATGGCTCAGTTGGCTCCA 2865
Query 2491 ATCCACGCCACACTGGCTCATCAGAGCTCGACCGCTAGAAGACACCCGGTTTATAAATGC 2550
||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2866 ATCCATGCAACATTGGCTCATCAGAGCTCGAACGCTAGAAGACACCCGGTTTATAAATGC 2925
Query 2551 AATGAAGTGCAAGCAGAAGGCGCGACTAAATTCTTGAGAGTAATGAGAGATTACATGGAG 2610
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2926 AATGAAGTGCAAGCAGAAGCCGCGACTAAGTTCTTGAGAGTAATGAGAGATTACATGGAG 2985
Query 2611 TCTCTTTGCTCAGATTTACACTCTCACACCATAACAAGTGTTCAATCTAATAGCGACAGG 2670
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2986 TCTCTTTGCTCAGATTTACACTCTCACACCATAACAAGTGTTCAATCCAATAGCGACAGG 3045
Query 2671 GTTTCTCTACTTCTTAAGGACAGTTTTATCGATTCGTTTCCTGGTAGAGACCGACCCTTC 2730
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 3046 GTTTCTCTACTTCTAAAGGACAGTTTTATCGATTCATTTCCTGGTAGAGATCGACCCTTC 3105
Query 2731 ATTAAG 2736
||||||
Sbjct 3106 ATTAAG 3111
Score = 276 bits (149), Expect = 1e-72
Identities = 198/219 (90%), Gaps = 13/219 (6%)
Strand=Plus/Plus
Query 53 ATCGAGATGATATATTAGGAGGATACCCGAAGAAGAAGACGGATGTTGAAGATTTTAGGG 112
|||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 146 ATCGAGATGATATATT---AGGATACCC---GAAGAAGACCGATGTTGAAGATTTTAGGG 199
Query 113 ATGGAGATGAAAATGGATGGACAACTTTGAGTAGGA--A-TACGTTGGACATGGTTAAGG 169
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 200 ATGGAGATGAAAATGGATGGACAACTTCGAGTAGGAGGAATACGTTGGACATGGTTAAGG 259
Query 170 AAGGTAGGTTGTTGAATGGAGAGGAAGT-GAATACAGCTTGCGAGGAGAAGGTATCGATA 228
|||||| ||||||||||| |||||| || || |||| |||||||||||||||||||||||
Sbjct 260 AAGGTATGTTGTTGAATGCAGAGGA-GTTGACTACATCTTGCGAGGAGAAGGTATCGATA 318
Query 229 AGTAGAGACGAAG-CGGGTACCTTGAGGAGTGAAGGACA 266
|||||||||||| ||| ||||||||||||||||| |||
Sbjct 319 AGTAGAGACGAATTCGG-TACCTTGAGGAGTGAAGCACA 356
Score = 220 bits (119), Expect = 5e-56
Identities = 125/128 (98%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 2302 GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTCCCAATGATTCGGCCATTTCAGTGGCAG 2361
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2599 GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAG 2658
Query 2362 AGTTTATTGCTTCCGGTTCTGCCTGGAAGGATGTTTGATTTCCTTGAGGCACCAGTTCCC 2421
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2659 AGTTTATTGCTTCCGGTTCTGCCTGGAAGGATGTTTGATTTCCTCGAGGCACCGGTTCCC 2718
Query 2422 TTCCTTGT 2429
||||||||
Sbjct 2719 TTCCTTGT 2726
Score = 126 bits (68), Expect = 1e-27
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 2834 AGTTATTTGTAGACACACAACTGTTTAGTGTTTTATCAGACTCGAGATTATCGAGCTTTG 2893
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 3110 AGTTATTTGTAGACACACAACTGTTTAGTGTTTTATCAGACTCGCGACTATCGAGCTTTG 3169
Query 2894 AGAACGGGCGTCTCTGA 2910
|||||||| ||||||||
Sbjct 3170 AGAACGGGAGTCTCTGA 3186
Score = 63.9 bits (34), Expect = 8e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 8 CGGATATGCAGGGAGACGTTTTGGCTGTTCATCG 41
||||||||||||||||||||||||||||||||||
Sbjct 116 CGGATATGCAGGGAGACGTTTTGGCTGTTCATCG 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144631296669
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5