BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906855
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20450.1 | Symbols: | Ribosomal protein L14 | chr2:8813862-... 688 0.0
AT4G27090.1 | Symbols: | Ribosomal protein L14 | chr4:13593905... 383 7e-106
> AT2G20450.1 | Symbols: | Ribosomal protein L14 | chr2:8813862-8815253
FORWARD LENGTH=648
Length=648
Score = 688 bits (372), Expect = 0.0
Identities = 394/405 (97%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAAGAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 62 ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAGGAT 121
Query 61 TACGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTTGTGGATGCC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TATGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTTGTGGATGCC 181
Query 121 CCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTAACTGACATTGTGATT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 182 CCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTTACTGACATCGTCATT 241
Query 181 GATATCAACAGAGTGCCCAAGAAGAAGCATTTGATTGAGGCAATGGAGAAGGCTGATGTG 240
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 GATATCAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGATGTG 301
Query 241 AAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCT 361
Query 301 TCACTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGGTATT 360
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGGTATT 421
Query 361 GTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGACCGCTGCTTGA 405
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 GTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCTGCTTGA 466
> AT4G27090.1 | Symbols: | Ribosomal protein L14 | chr4:13593905-13595252
REVERSE LENGTH=669
Length=669
Score = 383 bits (207), Expect = 7e-106
Identities = 344/410 (84%), Gaps = 10/410 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAAGAT 60
|||||||| ||||| | ||| ||||| |||||||| || || || |||||||| ||||||
Sbjct 66 ATGGGTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGGAGAAGAT 125
Query 61 TACGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTT-GTGGATGC 119
| ||||||||||| ||||||||||| || || ||||| ||||| || || ||||||||
Sbjct 126 CATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGC-TTTGGTGGATGC 184
Query 120 CCCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTAACTGACATTGTGAT 179
|||||| |||||||| ||||||||||| || |||||||||||||| || || ||||| ||
Sbjct 185 CCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGATATTGTCAT 244
Query 180 TGATATCAACAGAGTGCCCAAGAAGAA-GCATTTGATTGAGGCAATGGAGAAGGCTGATG 238
||| |||||| | ||||| |||||||| || |||||| ||||||||||| ||||||||||
Sbjct 245 TGACATCAACCGTGTGCCAAAGAAGAAGGC-TTTGATCGAGGCAATGGAAAAGGCTGATG 303
Query 239 TGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGA-GAAGA 297
||||||||||||||||||| || |||||||||||||| ||||| |||||||| | | ||
Sbjct 304 TGAAGAACAAGTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAA-ACGTAGG 362
Query 298 GCTTCAC-TCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGG 356
||| || | || || ||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 363 GCTA-ACCTTAACGACTTTGATAGGTTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGG 421
Query 357 TATTGTGAGGCAGGAGCTTGCTAAGCTAAA-AAGGGAGACCGCTGCTTGA 405
| |||| ||||| |||||||| || || || |||| ||| | |||| |||
Sbjct 422 TGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGG-AGATCACTGCCTGA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5