BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906858
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20463.1 | Symbols: | Defensin-like (DEFL) family protein |... 263 7e-70
> AT2G20463.1 | Symbols: | Defensin-like (DEFL) family protein
| chr2:8823733-8824122 REVERSE LENGTH=276
Length=276
Score = 263 bits (142), Expect = 7e-70
Identities = 236/280 (84%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 1 ATGGGATTTTCCCCCAAAACTTTAGTGGCATTTTGTTTTACTGTCCTCTTCATCATATCT 60
|||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 1 ATGGGATTTTCCCCAAAAACTTTAGTCGCATTTTGTTGGACTGTTCTCTTCATCATATCT 60
Query 61 TTTGTTCATTGTCTTCCTATGACTCCTGATGG-AAGTCCGGGTAATGGAAGAAAGCTAA- 118
||||||||||||||||||||||||| || ||| || |||||| |||||| | ||| ||
Sbjct 61 TTTGTTCATTGTCTTCCTATGACTCATGGTGGGAAA-CCGGGTTATGGAATAGAGCGAAC 119
Query 119 --TTCCTCGTCCGGAATGGAGATGCTACGAGGATGATGGGTGTCGTAAGGGACAAGTAGC 176
|| ||||||||||||||||||||||| |||||| ||||||| ||||||||| | |||
Sbjct 120 AATTATTCGTCCGGAATGGAGATGCTACGTGGATGAAGGGTGTCCTAAGGGACAGGGAGC 179
Query 177 AGGCTGCGATCGTTATTGTAAAGGAATA-AGCATTACTTACGGCATTTGTATTGGAGTCA 235
| |||||| |||||||| ||| ||| | | ||||||||||||||||||| |||
Sbjct 180 ACCCTGCGAAAAAAATTGTAAA--AATGTAGC-TGA-TTACGGCATTTGTATTGGAATCA 235
Query 236 GATGTTGTTGTTTTGAAGTTACACCTATTCCTCCT-CCTA 274
||||||||||||||| |||| |||| |||||||| ||||
Sbjct 236 AATGTTGTTGTTTTGATGTTATACCTGTTCCTCCTACCTA 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12818275995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5