BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906860
Length=192
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20480.1 | Symbols: | unknown protein; Has 19 Blast hits to... 322 7e-88
> AT2G20480.1 | Symbols: | unknown protein; Has 19 Blast hits
to 19 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:8830565-8831533 REVERSE
LENGTH=379
Length=379
Score = 322 bits (174), Expect = 7e-88
Identities = 186/192 (97%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAATCTACAGAGACTCCGGCGAGATCGAACGCAACTGTTAAATCTCAGAAACCT 60
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 38 ATGAAGAAATCTACAGAGACTCCGGCGAGACCGAACGCAACTGTTAAAACTCAGAAACCT 97
Query 61 CCTTTCAGACCTGCCGTTGATGACACCAAACCTGTTCTTCAGGACCCTATTCTGAGATCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 CCTTTCAGACCTGCCGTTGATGACACCAAACCTGTTCTTCAGGACCCTATTCTGAGATCG 157
Query 121 GATCCAATGGAGACAGAAGAAGCTGTGCTGAGATTGCCTCCTTTCCCAGTGATAAAACCA 180
||||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct 158 GATCCAATGGAGACAGAAGAAGCTGTGCTGAGATTGCCTTCTTTCCCAATGATCAGACCA 217
Query 181 TCTGAATCGTAG 192
||||||||||||
Sbjct 218 TCTGAATCGTAG 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8500928319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5