BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906871

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20562.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   339    9e-93


> AT2G20562.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins 
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr2:8850207-8850929 REVERSE LENGTH=476
Length=476

 Score =  339 bits (183),  Expect = 9e-93
 Identities = 210/223 (94%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAGAATGTAGACCTCTGGGTTTCTTATTAGGATTACCATTTGCTCTTGTTGCTCTC  60
            |||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct  95   ATGGGAGATTGTAGACCTCTAGGTTTCTTAATAGGACTACCATTTGCTCTTGTTGCTCTC  154

Query  61   GTTCTTTCCCTAGTCGGTGCTGTTATCTGGATCATTGGGACGATATTGAGTTGTTTGTGC  120
            |||||  |||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  155  GTTCTCGCCCTCGTTGGTGCTGTTATCTGGATCATTGGGACGGTATTGAGTTGTTTGTGC  214

Query  121  CCATGTTGCTTCTGTTTCGCTGCGTTGGCTAACTTCGCTGTTGGA-CTCATCAAACTTCC  179
            |||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||
Sbjct  215  CCATGTTGCTTCTGTTTCGCTGCGCTGGCTAACTTCGCCGTT-GATCTCATCAAACTTCC  273

Query  180  TATCAAAGTCCTCCGTTGGTTTACCCACTCCATTCCTTGTTAA  222
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  TATCAAAGTCCTCCGTTGGTTTACCCACTCCATTCCTTGTTAA  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5